WERAM Information

Tag Content
WERAM ID WERAM-Sob-0047
Ensembl Protein ID Sb03g026080.1
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Sb03g026080 Sb03g026080.1 Sb03g026080.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HAT HAT_other 3.3 27
Organism Sorghum bicolor
Domain Profile
  HAT HAT_other
Query: 185 PDNTKKQHLTQSRDEKSENKVKSKADELTSGADC 218
           PD+ K ++L + +DEKS+  V+   D LT   +C
Sbjct: 217 PDDPKCRYLCELQDEKSDMSVEEFWDTLTYRQEC 250
  Database: Schizosaccharomyces_pombe.ASM294v2.31.pep.all.fa
    Posted date:  Jun 9, 2016 10:46 AM
  Number of letters in database: 2,387,764
  Number of sequences in database:  5146
  
Lambda     K      H
   0.309    0.126    0.368 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5146
Number of Hits to DB: 1,114,153
Number of extensions: 36690
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 5
Length of query: 299
Length of database: 2,387,764
Length adjustment: 88
Effective length of query: 211
Effective length of database: 1,934,916
Effective search space: 408267276
Effective search space used: 408267276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.4 bits)
Protein Sequence
(Fasta)		MVWFQCEDCG ENLKKPKLAS HFRCCSAYKL SCIDCGEFFS QETVQGHTQC ISEAEKYGPK 60
GQNKPSNGVQ GKADKPKPNA DVDINVGLST RPPWFCSLCK TTTTSKQTLL LHADGKKHRA 120
KAKAFHASQK QTNGAEQTPD VKEAGAVPTK ESVQVNGGMS GDRERNDDKD AAKRKRMDDM 180
TIEEPDNTKK QHLTQSRDEK SENKVKSKAD ELTSGADCKS VQKQKIKWKK IITKALKTNA 240
DGVMKLKKLQ KLVSKELQEC GVSKDEGLHA TLMDKIASSS RFSVDGKHVR LVAKNEEES 299
Nucleotide Sequence
(Fasta)		CCTAGCTCGC ATACGCGCCC GAGCAACGCT TTGTCTGCGA CGGGCGCCCG CCCTCCTGCC 60
GCCAGAAGCT TCCAGGAGCA TCAGCGATGG TGTGGTTCCA ATGCGAGGAC TGTGGCGAGA 120
ACCTCAAGAA GCCCAAGCTC GCCAGCCACT TCCGCTGCTG CTCCGCGTAC AAGCTGTCAT 180
GCATCGATTG CGGCGAGTTC TTCAGCCAGG AGACCGTGCA GGGGCACACC CAGTGCATCT 240
CCGAGGCCGA GAAGTATGGT CCTAAGGGAC AGAACAAGCC ATCCAATGGT GTACAGGGTA 300
AGGCAGATAA GCCAAAGCCA AATGCAGATG TTGATATCAA TGTTGGGCTG TCGACACGGC 360
CTCCTTGGTT CTGTAGCCTA TGCAAGACCA CTACCACAAG CAAGCAAACT CTCTTACTGC 420
ATGCTGATGG GAAGAAGCAT AGGGCAAAGG CGAAAGCCTT CCATGCTTCT CAGAAACAAA 480
CAAATGGTGC AGAACAAACT CCAGATGTGA AGGAAGCCGG AGCTGTACCC ACAAAAGAAT 540
CTGTTCAAGT AAATGGTGGT ATGAGTGGTG ATCGTGAAAG AAATGATGAT AAAGATGCTG 600
CGAAAAGAAA ACGAATGGAT GACATGACCA TAGAGGAGCC AGATAACACA AAAAAACAGC 660
ATTTAACGCA GTCTAGAGAT GAGAAGTCAG AAAACAAAGT GAAGAGTAAG GCAGATGAAC 720
TAACAAGTGG TGCCGACTGC AAAAGTGTTC AGAAACAAAA GATCAAATGG AAGAAGATTA 780
TTACTAAAGC ACTGAAGACG AACGCAGATG GAGTTATGAA ACTAAAGAAG CTACAAAAGC 840
TAGTCTCCAA GGAGCTTCAG GAATGTGGTG TCTCTAAAGA CGAGGGTCTC CATGCTACCT 900
TGATGGATAA AATAGCTTCA AGCTCCAGAT TTTCTGTTGA TGGCAAGCAT GTTAGACTGG 960
TGGCTAAGAA TGAAGAAGAA TCTTAGAAAG AGGTTGTCAG TCATTTCTTG GCATTGTTCC 1020
TGGCCTAATT CTTTGGTGTC AACTTTCAGA TGGCTTATAG CCAAGTTTTG GTTAAATTGA 1080
GTGCATGAAC CATCAATTAT ATCCATGACC TGACGGTATG GGAATTTTGA ATCTGAATTT 1140
TCTTGGCAAC CGTTCAAAAG TGAACTTTTA ACACTTT 1178
Sequence Source Ensembl
Orthology
Created Date 25-Jun-2016