WERAM Information

Tag Content
WERAM ID WERAM-Brr-0088
Ensembl Protein ID Bra017124.1-P
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bra017124 Bra017124.1 Bra017124.1-P
Status Unreviewed
Classification
Type Family E-value Score Start End
HAT HAT_other 0.41 34
Organism Brassica rapa
Domain Profile
  HAT HAT_other
Query: 102 YQYWRWQPHKCDLPRFNGTKLLERLRNKRMVYVGDSLNRGQWVSMVCMT 150
           ++Y  W P  CD    NG  LL  L     + +  +LNR QWV +V +T
Sbjct: 164 FKYTSWSPMGCDA---NGRCLLAALTMDNRLTIQANLNRLQWVQLVDLT 209
  Database: Homo_sapiens.GRCh38.pep.all.fa
    Posted date:  Jun 9, 2016 10:45 AM
  Number of letters in database: 38,475,758
  Number of sequences in database:  102,450
  
Lambda     K      H
   0.319    0.134    0.423 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 102450
Number of Hits to DB: 33,657,917
Number of extensions: 1474510
Number of successful extensions: 3028
Number of sequences better than 10.0: 9
Number of HSP's gapped: 3088
Number of HSP's successfully gapped: 9
Length of query: 413
Length of database: 38,475,758
Length adjustment: 109
Effective length of query: 304
Effective length of database: 27,308,708
Effective search space: 8301847232
Effective search space used: 8301847232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Protein Sequence
(Fasta)		MAKRQLLMLG IRASFHTLAA VLVAGVIFTA VFLSRNGMRK ETPQSNGVSN VEEGEGSDRE 60
CNIFEGKWVF DNESKPIYKE EECKFMSDQL ACGKFGRKDS SYQYWRWQPH KCDLPRFNGT 120
KLLERLRNKR MVYVGDSLNR GQWVSMVCMT SSVITNPRMM YFHSNGSNLI TFKSLEYNAT 180
IDFYWAPLMV ESNSDDPTNH RLPERIVRIQ SIEKHARHWT ESDIIVLNSY LWWLRPHMKT 240
LWGSFEKLNG IYKEVEMVRV YEMALQTMSQ WLEVHVNSNL TKLFFMSMSP THERAEEWGG 300
KTKQNCYGET SLIEKKGYHG KGSDPKMMRV VENVLDELKR RGLNIQMINI TQLSEYRKDG 360
HPSIYRKQWE PLKESQVLDP SSYSDCIHWC LPGVPDVWNQ LLYAYIVEDH HST 413
Nucleotide Sequence
(Fasta)		ATGGCAAAGC GACAACTATT GATGCTAGGA ATTAGAGCGA GCTTCCACAC TCTCGCCGCC 60
GTGCTTGTGG CCGGAGTAAT ATTCACTGCC GTGTTTTTGT CCCGAAACGG TATGCGAAAA 120
GAAACTCCTC AAAGCAATGG TGTTTCGAAC GTGGAAGAAG GCGAGGGCAG TGACAGAGAG 180
TGTAATATTT TCGAAGGAAA ATGGGTGTTT GATAACGAGT CAAAGCCTAT TTATAAAGAA 240
GAAGAGTGTA AGTTCATGTC CGATCAGCTG GCTTGTGGGA AGTTTGGAAG AAAAGATTCG 300
AGTTACCAAT ACTGGAGGTG GCAACCTCAC AAGTGTGATC TCCCCAGGTT TAATGGGACG 360
AAGTTGCTGG AGCGGCTGAG AAATAAGAGG ATGGTGTACG TAGGAGACTC CTTGAACAGA 420
GGCCAATGGG TATCAATGGT GTGTATGACT AGTTCTGTGA TTACAAATCC AAGGATGATG 480
TATTTTCACA GCAACGGCTC TAATCTCATC ACTTTCAAAT CGCTCGAATA CAACGCGACA 540
ATAGATTTTT ATTGGGCTCC CTTGATGGTG GAATCCAACT CGGACGATCC AACAAACCAC 600
AGGTTACCTG AACGGATAGT TCGGATCCAA TCGATAGAGA AACATGCGAG GCATTGGACT 660
GAATCTGATA TCATTGTCTT AAACTCTTAT TTGTGGTGGT TAAGGCCTCA TATGAAGACA 720
CTGTGGGGGT CATTTGAGAA GTTAAATGGA ATATACAAAG AAGTGGAGAT GGTTAGAGTT 780
TATGAGATGG CTTTGCAAAC AATGTCTCAG TGGTTGGAAG TTCACGTTAA CTCCAATCTT 840
ACCAAACTTT TTTTCATGTC CATGTCTCCC ACCCATGAAA GGGCCGAAGA ATGGGGAGGA 900
AAAACTAAAC AGAACTGTTA CGGAGAAACT AGTCTGATAG AAAAAAAAGG ATATCATGGA 960
AAAGGGTCGG ACCCAAAAAT GATGAGAGTC GTCGAAAATG TACTTGACGA GCTAAAAAGG 1020
CGAGGATTGA ATATACAGAT GATAAACATA ACACAATTAT CAGAGTATAG AAAGGATGGA 1080
CACCCTTCGA TATACAGAAA ACAATGGGAG CCACTGAAGG AAAGCCAAGT CTTGGATCCA 1140
AGTAGTTACT CAGATTGTAT ACATTGGTGT TTGCCTGGAG TTCCTGATGT ATGGAATCAG 1200
CTCCTTTATG CTTATATTGT TGAGGATCAC CACTCTACTT GA 1243
Sequence Source Ensembl
Orthology
Created Date 25-Jun-2016