WERAM Information

Tag Content
WERAM ID WERAM-Bro-0172
Ensembl Protein ID Bo9g027360.1
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bo9g027360 Bo9g027360.1 Bo9g027360.1
Status Unreviewed
Classification
Type Family E-value Score Start End
Me_Reader PHD 1.20e-08 36.5 68 554
Organism Brassica oleracea
Domain Profile
  Me_Reader PHD
       PHD.txt   2 tiClvCgkddegekemvqCdeCddwfHlkCvklp 35 
                    +C +C+  ++g++++ +C+eC++ +H +Cv+ p
  Bo9g027360.1  68 HYCWACRSYKTGTTYFYYCNECNNYYHKECVESP 101
                   69****999999999****************988 PP
       PHD.txt   3 iClvCgkddegekemvqCdeCddwfHlkCvklp........lsslpeg...........kswyCpsCke 52 
                   +C vC  +d+ ++++  C +Cd  +H++C++lp                          +sw+C  C +
  Bo9g027360.1 181 TCDVC-ASDDTKNCFYSCLQCDFIVHGRCINLPhvirischS-----HrlsftsslpfgNSWFCGVCSQ 243
                   7****.66666789*******************988555550.....24555555666699******87 PP
       PHD.txt   3 iClvCgkddegekemvqCde.CddwfHlkCvkl 34 
                   +C vC+++ +++     C + C  ++H++C +l
  Bo9g027360.1 237 FCGVCSQKMDENYGSYSCTKsCTYAVHTNCATL 269
                   8****544444344899*999*********987 PP
       PHD.txt   2 tiClvC.gkddegekemvqCdeCddwfHlkCvklplsslpeg..........kswyCpsCk 51 
                   + C++C    ++g+  +  C eCd   H++C +lp+ +  e           + +yC+ C 
  Bo9g027360.1 326 QHCQACiFPLYDGN--VYTCMECDFFLHGTCANLPRIKRIEHrhrlilvkggSYFYCRFCD 384
                   57999944666664..899****************554444457788887767799***97 PP
       PHD.txt   3 iClvCgkddegekemvqCdeCddwfHlkCvklplsslpeg...kswy................CpsC 50 
                    C++C+++ + +k    C+eC+  fH++Cv  +   l+eg     +y                C  C
  Bo9g027360.1 488 WCQICEETTDPKKGYYTCSECRVTFHTECVLGNDIYLKEGnelYTYYgrkveiilnnrlsrpiCHGC 554
                   6****877777777****************8887777777433334455555555555555555555 PP
Protein Sequence
(Fasta)		MSSIDNPPPS SFTCLVVNER AVQWFQKKTI GETTYLIISD VQYEDTLNSH HLRSVLGCNN 60
KEGERSDHYC WACRSYKTGT TYFYYCNECN NYYHKECVES PPIFISSYHP KYPLQLLKYD 120
RGIRRECLCC GLEIYGLVYH SSISDLFMDP LCASKQEFST IHNPERHEHT LHYFPRKAPI 180
TCDVCASDDT KNCFYSCLQC DFIVHGRCIN LPHVIRISCH SHRLSFTSSL PFGNSWFCGV 240
CSQKMDENYG SYSCTKSCTY AVHTNCATLL DIWAGKELKD QPELEDDNIK PSFEEMGDGI 300
IRHFRHAHHR MKFIEDIEGV FDAKQQHCQA CIFPLYDGNV YTCMECDFFL HGTCANLPRI 360
KRIEHRHRLI LVKGGSYFYC RFCDRYSCGF GYTCGEGCLD YYLDVRCASL SQLVDHPSHP 420
HPFFLFYQRK SYQKCSACER TVSISLNCIE RDFVLCCRCA SLPYKVKYDH DEHMLTLSYE 480
KIASGPCWCQ ICEETTDPKK GYYTCSECRV TFHTECVLGN DIYLKEGNEL YTYYGRKVEI 540
ILNNRLSRPI CHGCRKRCQY NIVFKNYLGN IFCSSIEVIY SR 582
Nucleotide Sequence
(Fasta)		ATGAGTTCCA TCGACAACCC TCCTCCTTCT TCTTTCACAT GCCTTGTCGT AAATGAGAGA 60
GCAGTACAAT GGTTCCAAAA GAAAACAATT GGCGAAACAA CTTATCTCAT AATCTCTGAT 120
GTTCAATACG AGGACACTTT AAATTCTCAC CATCTCCGAT CGGTTCTTGG ATGCAACAAT 180
AAAGAAGGCG AACGAAGCGA CCACTACTGC TGGGCTTGTA GAAGTTATAA AACTGGTACC 240
ACCTATTTTT ATTATTGCAA CGAGTGTAAT AACTATTACC ACAAAGAATG TGTTGAGTCT 300
CCTCCTATAT TCATTTCCTC TTACCACCCA AAATATCCTC TTCAGCTTCT CAAATATGAT 360
AGGGGTATTA GACGGGAATG TCTTTGTTGT GGGTTAGAAA TCTACGGACT AGTTTATCAT 420
TCTTCTATTT CTGATCTTTT TATGGATCCT CTTTGCGCAA GCAAACAAGA GTTTTCTACT 480
ATACACAATC CAGAAAGGCA TGAGCATACC CTCCATTACT TTCCTAGAAA AGCACCAATT 540
ACTTGCGATG TTTGCGCATC TGATGATACC AAAAATTGCT TCTACTCTTG TCTTCAATGC 600
GATTTTATTG TCCATGGAAG ATGTATCAAC TTGCCACACG TCATACGAAT ATCTTGTCAC 660
AGCCACCGTC TTTCTTTTAC TAGTTCTCTT CCTTTCGGAA ATTCTTGGTT TTGCGGAGTT 720
TGTAGCCAGA AGATGGATGA AAACTATGGA TCATATTCTT GCACAAAGAG TTGCACCTAT 780
GCAGTGCACA CTAACTGTGC TACTTTGCTT GATATATGGG CTGGTAAGGA ACTCAAGGAC 840
CAACCAGAGC TGGAAGATGA TAATATTAAG CCGTCGTTTG AGGAGATGGG TGATGGAATT 900
ATACGACATT TTAGGCATGC ACACCATCGC ATGAAATTTA TTGAAGATAT TGAAGGAGTT 960
TTTGATGCAA AACAACAACA TTGTCAAGCG TGCATATTTC CTCTTTATGA TGGTAATGTT 1020
TATACATGTA TGGAATGTGA TTTTTTTCTC CATGGAACGT GTGCAAATCT TCCTCGCATA 1080
AAACGTATTG AACATCGCCA CCGATTAATT CTAGTTAAAG GAGGAAGCTA TTTTTATTGT 1140
CGATTTTGCG ATCGCTACTC TTGCGGTTTC GGATACACGT GTGGCGAAGG GTGTCTCGAT 1200
TACTACCTGG ACGTAAGATG TGCCTCCTTA TCACAACTGG TCGATCATCC ATCTCATCCA 1260
CATCCTTTCT TCTTATTCTA TCAACGAAAA TCTTATCAAA AATGTTCGGC ATGTGAAAGA 1320
ACAGTAAGTA TAAGTTTAAA TTGTATTGAA CGTGACTTTG TATTGTGCTG TCGTTGTGCC 1380
AGTCTTCCTT ACAAGGTTAA GTATGATCAT GATGAGCATA TGCTCACCCT TTCTTATGAG 1440
AAAATTGCAA GTGGTCCTTG TTGGTGCCAA ATTTGTGAGG AGACAACAGA TCCGAAGAAA 1500
GGATACTACA CATGCAGTGA GTGTAGAGTC ACATTCCATA CAGAATGTGT ACTGGGAAAT 1560
GACATCTATC TGAAGGAAGG AAATGAGCTA TATACATACT ACGGACGCAA AGTTGAGATC 1620
ATCCTTAACA ACCGTCTCAG CCGACCCATC TGCCATGGTT GTCGAAAACG CTGTCAATAC 1680
AATATAGTAT TCAAAAATTA TCTTGGAAAT ATATTCTGTT CCTCCATTGA GGTAATATAT 1740
TCTCGATAA
Sequence Source Ensembl
Orthology
Created Date 25-Jun-2016