Tag |
Content |
WERAM ID |
WERAM-Arl-0015 |
Ensembl Protein ID |
Al_scaffold_0299_1 |
Gene Name |
|
Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-II |
1.20e-125 |
419.7 |
4 |
333 |
HDAC |
Class-I |
3.80e-32 |
112.8 |
17 |
324 |
|
Organism |
Arabidopsis lyrata |
Domain Profile |
HDAC Class-II
class-2.txt 5 vydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletae.klekeelesltvdsdsiyl 94 +yde+m+kh+++++++ +E+p+Ri+ i+++lq ag++++++ l ++ka++++l+lvH+++hv+ +++ + k+++++ +++++ dsiyl Al_scaffold_0299_1 4 CYDETMCKHDTPNGEV--DVECPDRIRFIWEKLQLAGVTQRCVVLGGSKAEDKHLKLVHTKKHVNFVKSIStKQKDSRRNRIASVLDSIYL 92 7*************99..8**************************************************998888899999********** PP class-2.txt 95 esksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklk...vkkilivDwDvHhGnGtqeif 182 + s++aa la+G+v+++++kv++gel++gfa+vRPPGHHae+++amGFClfnnvavaa++l+++ + vkkilivDwD+HhGnGtq++f Al_scaffold_0299_1 93 NGGSSEAAYLAAGSVVNVAEKVAEGELDCGFAIVRPPGHHAEADEAMGFCLFNNVAVAASYLLNERPdldVKKILIVDWDIHHGNGTQKMF 183 ***************************************************************9987778********************* PP class-2.txt 183 ykdpkvlylSlHR...........ydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaG 262 +kdp+vl++S+HR yd+gsf+p+ ++g+++ vgeg+g+gfn+Nv+w++g++gda+ylaa++++++p++keF+Pd++l+saG Al_scaffold_0299_1 184 WKDPRVLIFSVHRfkvagnayvarYDHGSFYPAGDDGDYNMVGEGPGKGFNINVPWEQGGCGDADYLAAWDHILIPVTKEFNPDIILLSAG 274 ************6444444444448****************************************************************** PP class-2.txt 263 fDaaegdplgglsvtakcyatltkqllklaggrvvlvlEGGynlkaiaeaveavvkaLl 321 fDaa gdplgg++vt+++y+ + k+l+++a+g++vl+lEGGynl+++a+++ a+v++Ll Al_scaffold_0299_1 275 FDAAIGDPLGGCCVTPDGYSVMLKKLMEFAQGKIVLALEGGYNLESLAKSSLACVQVLL 333 **********************************************************8 PP
HDAC Class-I
class-1.txt 17 gqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdglfeycqlitG 107 g+ + p r++ + e + g++++ ++ +ka+ ++l +h++++++f+k+++++++++ ++++ +v + + g e + l +G Al_scaffold_0299_1 17 GEVDVECPDRIRFIWEKLQLAGVTQRCVVLGGSKAEDKHLKLVHTKKHVNFVKSISTKQKDSRRNRIA--SVLDSIYLNGGSSEAAYLAAG 105 4555677899999988888899999999****************************999887775544..67777888889999999**** PP class-1.txt 108 asleaakkLnkkeadi..ainwaGGlhhakkseasGfcyvnDivlailellk.....khkrvlyididlhhGDgveeafyttdrvmtvsfh 191 + ++ a+k+ ++e d ai hha +ea Gfc n++ +a ll k++l +d d+hhG+g ++ f + rv+ s+h Al_scaffold_0299_1 106 SVVNVAEKVAEGELDCgfAIVRPP-GHHAEADEAMGFCLFNNVAVAASYLLNerpdlDVKKILIVDWDIHHGNGTQKMFWKDPRVLIFSVH 195 ***********9988611555554.5********************99999733333479******************************* PP class-1.txt 192 kyg............eeffPg..tGdlsdvgaekgkyyavnvPlkd.gidDesyekifksviskvieafePeavvlqcGaDslagDrlgef 267 +++ +f+P+ Gd + vg++ gk + +nvP ++ g+ D y + +++ +v++ f+P++++l G D+ gD+lg Al_scaffold_0299_1 196 RFKvagnayvarydhGSFYPAgdDGDYNMVGEGPGKGFNINVPWEQgGCGDADYLAAWDHILIPVTKEFNPDIILLSAGFDAAIGDPLGGC 286 9853332222222223589973359999***************98737******************************************* PP class-1.txt 268 nlsikghaecvkfvksf.nlpllvlGGGGYtlrnvaRc 304 ++ +g++ ++k + +f + ++++ GGY+l+ +a+ Al_scaffold_0299_1 287 CVTPDGYSVMLKKLMEFaQGKIVLALEGGYNLESLAKS 324 *****************6666777779*****999875 PP
|
Protein Sequence (Fasta) | GGSCYDETMC KHDTPNGEVD VECPDRIRFI WEKLQLAGVT QRCVVLGGSK AEDKHLKLVH 60 TKKHVNFVKS ISTKQKDSRR NRIASVLDSI YLNGGSSEAA YLAAGSVVNV AEKVAEGELD 120 CGFAIVRPPG HHAEADEAMG FCLFNNVAVA ASYLLNERPD LDVKKILIVD WDIHHGNGTQ 180 KMFWKDPRVL IFSVHRFKVA GNAYVARYDH GSFYPAGDDG DYNMVGEGPG KGFNINVPWE 240 QGGCGDADYL AAWDHILIPV TKEFNPDIIL LSAGFDAAIG DPLGGCCVTP DGYSVMLKKL 300 MEFAQGKIVL ALEGGYNLES LAKSSLACVQ VLLEEKGIQC SSGAYPLEST RRVVRAENRE 360 LRYNVFADSD TLMTSNENLK NLSADKNPAD AILHEVEELK SLWAARDGEL EARRKELKAK 420 KMELETWLML VGAREDEFRG LRAKVESLMR ERDEAVAKAE CLDKELQEER PRRRLENEEM 480 DMDSEDEDMD MDSEELEHDL KTMSREFKKD INLVFEKFKK DNELFIGELK KERELAITAA 540 VITTRYQVCR EWKSQGTLSL ELKFAAEVYH KLPLFD 576Protein Fasta Sequence
>Al_scaffold_0299_1|Class-I|Arabidopsis lyrata GGSCYDETMCKHDTPNGEVDVECPDRIRFIWEKLQLAGVTQRCVVLGGSKAEDKHLKLVHTKKHVNFVKSISTKQKDSRRNRIASVLDSIYLNGGSSEAAYLAAGSVVNVAEKVAEGELDCGFAIVRPPGHHAEADEAMGFCLFNNVAVAASYLLNERPDLDVKKILIVDWDIHHGNGTQKMFWKDPRVLIFSVHRFKVAGNAYVARYDHGSFYPAGDDGDYNMVGEGPGKGFNINVPWEQGGCGDADYLAAWDHILIPVTKEFNPDIILLSAGFDAAIGDPLGGCCVTPDGYSVMLKKLMEFAQGKIVLALEGGYNLESLAKSSLACVQVLLEEKGIQCSSGAYPLESTRRVVRAENRELRYNVFADSDTLMTSNENLKNLSADKNPADAILHEVEELKSLWAARDGELEARRKELKAKKMELETWLMLVGAREDEFRGLRAKVESLMRERDEAVAKAECLDKELQEERPRRRLENEEMDMDSEDEDMDMDSEELEHDLKTMSREFKKDINLVFEKFKKDNELFIGELKKERELAITAAVITTRYQVCREWKSQGTLSLELKFAAEVYHKLPLFD
|
Nucleotide Sequence (Fasta) | GGTGGGTCTT GTTATGACGA GACGATGTGC AAACACGACA CACCTAACGG TGAGGTTGAC 60 GTAGAGTGTC CCGATCGCAT CAGATTTATC TGGGAGAAGC TTCAGCTCGC CGGGGTCACC 120 CAAAGATGTG TGGTTCTTGG TGGTAGTAAA GCGGAAGATA AGCATCTCAA ATTGGTTCAC 180 ACAAAGAAAC ATGTTAATTT CGTGAAGAGT ATTAGCACAA AACAGAAAGA TTCTCGGAGA 240 AACAGGATTG CTTCAGTGTT GGATTCGATT TATCTGAATG GAGGTTCATC TGAAGCCGCA 300 TATCTTGCAG CTGGATCTGT TGTAAATGTG GCAGAGAAAG TTGCAGAAGG AGAGTTAGAT 360 TGTGGCTTTG CTATAGTGAG GCCCCCAGGA CACCATGCCG AGGCAGATGA AGCCATGGGT 420 TTTTGTTTAT TCAACAATGT AGCCGTTGCT GCTAGTTATT TACTAAACGA AAGACCGGAT 480 CTAGATGTCA AGAAAATTCT GATTGTTGAT TGGGATATCC ATCATGGAAA TGGTACACAG 540 AAGATGTTCT GGAAAGATCC TCGCGTACTG ATATTCTCTG TTCATAGGTT TAAAGTGGCT 600 GGAAATGCAT ATGTGGCTAG GTATGATCAC GGAAGTTTCT ATCCAGCGGG TGATGATGGA 660 GATTATAACA TGGTTGGGGA AGGTCCAGGT AAAGGGTTTA ACATAAACGT TCCATGGGAG 720 CAAGGAGGAT GTGGAGATGC AGATTATCTT GCCGCATGGG ACCATATCTT GATTCCTGTG 780 ACTAAGGAGT TTAATCCCGA TATTATTTTG CTTTCAGCTG GATTTGATGC AGCTATCGGT 840 GATCCGCTTG GGGGTTGTTG TGTTACACCA GATGGATATT CAGTTATGTT GAAGAAGCTA 900 ATGGAGTTTG CACAAGGAAA GATAGTGCTG GCGTTAGAGG GAGGGTACAA TCTTGAGTCA 960 TTGGCAAAGT CTTCACTCGC ATGTGTCCAA GTTCTGCTTG AAGAAAAAGG AATTCAATGT 1020 TCTTCTGGAG CATACCCATT AGAATCTACA CGGCGTGTCG TAAGAGCGGA GAATAGAGAG 1080 CTGAGGTACA ATGTTTTTGC TGATTCTGAT ACATTGATGA CGTCTAATGA GAATTTAAAG 1140 AACCTAAGTG CGGACAAAAA CCCTGCTGAC GCTATCCTTC ATGAAGTGGA AGAGTTAAAG 1200 TCTCTATGGG CTGCACGAGA TGGAGAATTG GAGGCAAGGA GAAAAGAGTT AAAGGCCAAA 1260 AAGATGGAGC TAGAAACGTG GCTAATGTTG GTTGGCGCTC GAGAAGATGA GTTTCGTGGT 1320 CTTCGTGCCA AAGTAGAGAG TTTGATGCGG GAGCGAGATG AGGCGGTAGC GAAAGCTGAG 1380 TGCCTAGATA AGGAACTCCA AGAAGAAAGG CCAAGAAGAC GACTTGAGAA TGAAGAAATG 1440 GATATGGACT CAGAAGATGA AGACATGGAC ATGGACTCAG AAGAACTCGA ACACGATCTC 1500 AAAACCATGT CTAGGGAGTT CAAGAAAGAC ATAAACCTTG TCTTCGAGAA GTTCAAAAAA 1560 GACAATGAGC TTTTCATTGG GGAGTTAAAG AAAGAAAGGG AGCTTGCCAT CACCGCAGCA 1620 GTTATCACCA CTCGGTATCA AGTATGTCGC GAATGGAAGA GCCAGGGTAC TCTAAGTTTG 1680 GAGCTTAAAT TCGCAGCAGA AGTATACCAC AAGCTCCCGC TCTTTGATTG A
1732Nucleotide Fasta Sequence
>Al_scaffold_0299_1|Class-I|Arabidopsis lyrata GGTGGGTCTTGTTATGACGAGACGATGTGCAAACACGACACACCTAACGGTGAGGTTGACGTAGAGTGTCCCGATCGCATCAGATTTATCTGGGAGAAGCTTCAGCTCGCCGGGGTCACCCAAAGATGTGTGGTTCTTGGTGGTAGTAAAGCGGAAGATAAGCATCTCAAATTGGTTCACACAAAGAAACATGTTAATTTCGTGAAGAGTATTAGCACAAAACAGAAAGATTCTCGGAGAAACAGGATTGCTTCAGTGTTGGATTCGATTTATCTGAATGGAGGTTCATCTGAAGCCGCATATCTTGCAGCTGGATCTGTTGTAAATGTGGCAGAGAAAGTTGCAGAAGGAGAGTTAGATTGTGGCTTTGCTATAGTGAGGCCCCCAGGACACCATGCCGAGGCAGATGAAGCCATGGGTTTTTGTTTATTCAACAATGTAGCCGTTGCTGCTAGTTATTTACTAAACGAAAGACCGGATCTAGATGTCAAGAAAATTCTGATTGTTGATTGGGATATCCATCATGGAAATGGTACACAGAAGATGTTCTGGAAAGATCCTCGCGTACTGATATTCTCTGTTCATAGGTTTAAAGTGGCTGGAAATGCATATGTGGCTAGGTATGATCACGGAAGTTTCTATCCAGCGGGTGATGATGGAGATTATAACATGGTTGGGGAAGGTCCAGGTAAAGGGTTTAACATAAACGTTCCATGGGAGCAAGGAGGATGTGGAGATGCAGATTATCTTGCCGCATGGGACCATATCTTGATTCCTGTGACTAAGGAGTTTAATCCCGATATTATTTTGCTTTCAGCTGGATTTGATGCAGCTATCGGTGATCCGCTTGGGGGTTGTTGTGTTACACCAGATGGATATTCAGTTATGTTGAAGAAGCTAATGGAGTTTGCACAAGGAAAGATAGTGCTGGCGTTAGAGGGAGGGTACAATCTTGAGTCATTGGCAAAGTCTTCACTCGCATGTGTCCAAGTTCTGCTTGAAGAAAAAGGAATTCAATGTTCTTCTGGAGCATACCCATTAGAATCTACACGGCGTGTCGTAAGAGCGGAGAATAGAGAGCTGAGGTACAATGTTTTTGCTGATTCTGATACATTGATGACGTCTAATGAGAATTTAAAGAACCTAAGTGCGGACAAAAACCCTGCTGACGCTATCCTTCATGAAGTGGAAGAGTTAAAGTCTCTATGGGCTGCACGAGATGGAGAATTGGAGGCAAGGAGAAAAGAGTTAAAGGCCAAAAAGATGGAGCTAGAAACGTGGCTAATGTTGGTTGGCGCTCGAGAAGATGAGTTTCGTGGTCTTCGTGCCAAAGTAGAGAGTTTGATGCGGGAGCGAGATGAGGCGGTAGCGAAAGCTGAGTGCCTAGATAAGGAACTCCAAGAAGAAAGGCCAAGAAGACGACTTGAGAATGAAGAAATGGATATGGACTCAGAAGATGAAGACATGGACATGGACTCAGAAGAACTCGAACACGATCTCAAAACCATGTCTAGGGAGTTCAAGAAAGACATAAACCTTGTCTTCGAGAAGTTCAAAAAAGACAATGAGCTTTTCATTGGGGAGTTAAAGAAAGAAAGGGAGCTTGCCATCACCGCAGCAGTTATCACCACTCGGTATCAAGTATGTCGCGAATGGAAGAGCCAGGGTACTCTAAGTTTGGAGCTTAAATTCGCAGCAGAAGTATACCACAAGCTCCCGCTCTTTGATTGA
|
Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |