WERAM Information


Tag Content
WERAM ID WERAM-Arl-0015
Ensembl Protein ID Al_scaffold_0299_1
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Al_scaffold_0299_1 Al_scaffold_0299_1 Al_scaffold_0299_1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-II 1.20e-125 419.7 4 333
HDAC Class-I 3.80e-32 112.8 17 324
Organism Arabidopsis lyrata
Domain Profile
  HDAC Class-II

         class-2.txt   5 vydekmlkhqaleenkekhpEkpeRiqailsrlqeagllekleelkarkatkeelqlvHseehvelletae.klekeelesltvdsdsiyl 94 
+yde+m+kh+++++++ +E+p+Ri+ i+++lq ag++++++ l ++ka++++l+lvH+++hv+ +++ + k+++++ +++++ dsiyl
Al_scaffold_0299_1 4 CYDETMCKHDTPNGEV--DVECPDRIRFIWEKLQLAGVTQRCVVLGGSKAEDKHLKLVHTKKHVNFVKSIStKQKDSRRNRIASVLDSIYL 92
7*************99..8**************************************************998888899999********** PP
class-2.txt 95 esksikaarlavGavlelvdkvlkgelkngfavvRPPGHHaeestamGFClfnnvavaakllqqklk...vkkilivDwDvHhGnGtqeif 182
+ s++aa la+G+v+++++kv++gel++gfa+vRPPGHHae+++amGFClfnnvavaa++l+++ + vkkilivDwD+HhGnGtq++f
Al_scaffold_0299_1 93 NGGSSEAAYLAAGSVVNVAEKVAEGELDCGFAIVRPPGHHAEADEAMGFCLFNNVAVAASYLLNERPdldVKKILIVDWDIHHGNGTQKMF 183
***************************************************************9987778********************* PP
class-2.txt 183 ykdpkvlylSlHR...........ydkgsffpesgsgavdevgegkgegfnvNvawngglmgdaeylaafrevvlpiakeFkPdlvlvsaG 262
+kdp+vl++S+HR yd+gsf+p+ ++g+++ vgeg+g+gfn+Nv+w++g++gda+ylaa++++++p++keF+Pd++l+saG
Al_scaffold_0299_1 184 WKDPRVLIFSVHRfkvagnayvarYDHGSFYPAGDDGDYNMVGEGPGKGFNINVPWEQGGCGDADYLAAWDHILIPVTKEFNPDIILLSAG 274
************6444444444448****************************************************************** PP
class-2.txt 263 fDaaegdplgglsvtakcyatltkqllklaggrvvlvlEGGynlkaiaeaveavvkaLl 321
fDaa gdplgg++vt+++y+ + k+l+++a+g++vl+lEGGynl+++a+++ a+v++Ll
Al_scaffold_0299_1 275 FDAAIGDPLGGCCVTPDGYSVMLKKLMEFAQGKIVLALEGGYNLESLAKSSLACVQVLL 333
**********************************************************8 PP

  HDAC Class-I

         class-1.txt  17 gqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdglfeycqlitG 107
g+ + p r++ + e + g++++ ++ +ka+ ++l +h++++++f+k+++++++++ ++++ +v + + g e + l +G
Al_scaffold_0299_1 17 GEVDVECPDRIRFIWEKLQLAGVTQRCVVLGGSKAEDKHLKLVHTKKHVNFVKSISTKQKDSRRNRIA--SVLDSIYLNGGSSEAAYLAAG 105
4555677899999988888899999999****************************999887775544..67777888889999999**** PP
class-1.txt 108 asleaakkLnkkeadi..ainwaGGlhhakkseasGfcyvnDivlailellk.....khkrvlyididlhhGDgveeafyttdrvmtvsfh 191
+ ++ a+k+ ++e d ai hha +ea Gfc n++ +a ll k++l +d d+hhG+g ++ f + rv+ s+h
Al_scaffold_0299_1 106 SVVNVAEKVAEGELDCgfAIVRPP-GHHAEADEAMGFCLFNNVAVAASYLLNerpdlDVKKILIVDWDIHHGNGTQKMFWKDPRVLIFSVH 195
***********9988611555554.5********************99999733333479******************************* PP
class-1.txt 192 kyg............eeffPg..tGdlsdvgaekgkyyavnvPlkd.gidDesyekifksviskvieafePeavvlqcGaDslagDrlgef 267
+++ +f+P+ Gd + vg++ gk + +nvP ++ g+ D y + +++ +v++ f+P++++l G D+ gD+lg
Al_scaffold_0299_1 196 RFKvagnayvarydhGSFYPAgdDGDYNMVGEGPGKGFNINVPWEQgGCGDADYLAAWDHILIPVTKEFNPDIILLSAGFDAAIGDPLGGC 286
9853332222222223589973359999***************98737******************************************* PP
class-1.txt 268 nlsikghaecvkfvksf.nlpllvlGGGGYtlrnvaRc 304
++ +g++ ++k + +f + ++++ GGY+l+ +a+
Al_scaffold_0299_1 287 CVTPDGYSVMLKKLMEFaQGKIVLALEGGYNLESLAKS 324
*****************6666777779*****999875 PP

Protein Sequence
(Fasta)
GGSCYDETMC KHDTPNGEVD VECPDRIRFI WEKLQLAGVT QRCVVLGGSK AEDKHLKLVH 60
TKKHVNFVKS ISTKQKDSRR NRIASVLDSI YLNGGSSEAA YLAAGSVVNV AEKVAEGELD 120
CGFAIVRPPG HHAEADEAMG FCLFNNVAVA ASYLLNERPD LDVKKILIVD WDIHHGNGTQ 180
KMFWKDPRVL IFSVHRFKVA GNAYVARYDH GSFYPAGDDG DYNMVGEGPG KGFNINVPWE 240
QGGCGDADYL AAWDHILIPV TKEFNPDIIL LSAGFDAAIG DPLGGCCVTP DGYSVMLKKL 300
MEFAQGKIVL ALEGGYNLES LAKSSLACVQ VLLEEKGIQC SSGAYPLEST RRVVRAENRE 360
LRYNVFADSD TLMTSNENLK NLSADKNPAD AILHEVEELK SLWAARDGEL EARRKELKAK 420
KMELETWLML VGAREDEFRG LRAKVESLMR ERDEAVAKAE CLDKELQEER PRRRLENEEM 480
DMDSEDEDMD MDSEELEHDL KTMSREFKKD INLVFEKFKK DNELFIGELK KERELAITAA 540
VITTRYQVCR EWKSQGTLSL ELKFAAEVYH KLPLFD 576
Nucleotide Sequence
(Fasta)
GGTGGGTCTT GTTATGACGA GACGATGTGC AAACACGACA CACCTAACGG TGAGGTTGAC 60
GTAGAGTGTC CCGATCGCAT CAGATTTATC TGGGAGAAGC TTCAGCTCGC CGGGGTCACC 120
CAAAGATGTG TGGTTCTTGG TGGTAGTAAA GCGGAAGATA AGCATCTCAA ATTGGTTCAC 180
ACAAAGAAAC ATGTTAATTT CGTGAAGAGT ATTAGCACAA AACAGAAAGA TTCTCGGAGA 240
AACAGGATTG CTTCAGTGTT GGATTCGATT TATCTGAATG GAGGTTCATC TGAAGCCGCA 300
TATCTTGCAG CTGGATCTGT TGTAAATGTG GCAGAGAAAG TTGCAGAAGG AGAGTTAGAT 360
TGTGGCTTTG CTATAGTGAG GCCCCCAGGA CACCATGCCG AGGCAGATGA AGCCATGGGT 420
TTTTGTTTAT TCAACAATGT AGCCGTTGCT GCTAGTTATT TACTAAACGA AAGACCGGAT 480
CTAGATGTCA AGAAAATTCT GATTGTTGAT TGGGATATCC ATCATGGAAA TGGTACACAG 540
AAGATGTTCT GGAAAGATCC TCGCGTACTG ATATTCTCTG TTCATAGGTT TAAAGTGGCT 600
GGAAATGCAT ATGTGGCTAG GTATGATCAC GGAAGTTTCT ATCCAGCGGG TGATGATGGA 660
GATTATAACA TGGTTGGGGA AGGTCCAGGT AAAGGGTTTA ACATAAACGT TCCATGGGAG 720
CAAGGAGGAT GTGGAGATGC AGATTATCTT GCCGCATGGG ACCATATCTT GATTCCTGTG 780
ACTAAGGAGT TTAATCCCGA TATTATTTTG CTTTCAGCTG GATTTGATGC AGCTATCGGT 840
GATCCGCTTG GGGGTTGTTG TGTTACACCA GATGGATATT CAGTTATGTT GAAGAAGCTA 900
ATGGAGTTTG CACAAGGAAA GATAGTGCTG GCGTTAGAGG GAGGGTACAA TCTTGAGTCA 960
TTGGCAAAGT CTTCACTCGC ATGTGTCCAA GTTCTGCTTG AAGAAAAAGG AATTCAATGT 1020
TCTTCTGGAG CATACCCATT AGAATCTACA CGGCGTGTCG TAAGAGCGGA GAATAGAGAG 1080
CTGAGGTACA ATGTTTTTGC TGATTCTGAT ACATTGATGA CGTCTAATGA GAATTTAAAG 1140
AACCTAAGTG CGGACAAAAA CCCTGCTGAC GCTATCCTTC ATGAAGTGGA AGAGTTAAAG 1200
TCTCTATGGG CTGCACGAGA TGGAGAATTG GAGGCAAGGA GAAAAGAGTT AAAGGCCAAA 1260
AAGATGGAGC TAGAAACGTG GCTAATGTTG GTTGGCGCTC GAGAAGATGA GTTTCGTGGT 1320
CTTCGTGCCA AAGTAGAGAG TTTGATGCGG GAGCGAGATG AGGCGGTAGC GAAAGCTGAG 1380
TGCCTAGATA AGGAACTCCA AGAAGAAAGG CCAAGAAGAC GACTTGAGAA TGAAGAAATG 1440
GATATGGACT CAGAAGATGA AGACATGGAC ATGGACTCAG AAGAACTCGA ACACGATCTC 1500
AAAACCATGT CTAGGGAGTT CAAGAAAGAC ATAAACCTTG TCTTCGAGAA GTTCAAAAAA 1560
GACAATGAGC TTTTCATTGG GGAGTTAAAG AAAGAAAGGG AGCTTGCCAT CACCGCAGCA 1620
GTTATCACCA CTCGGTATCA AGTATGTCGC GAATGGAAGA GCCAGGGTAC TCTAAGTTTG 1680
GAGCTTAAAT TCGCAGCAGA AGTATACCAC AAGCTCCCGC TCTTTGATTG A 1732
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Art-0147 AT5G61070.1 Arabidopsis thaliana 74 0.0 745
WERAM-Brr-0068 Bra012984.1-P Brassica rapa 78 1e-169 593
WERAM-Bro-0134 Bo7g098310.1 Brassica oleracea 83 2e-168 590
WERAM-Viv-0107 VIT_17s0000g07280.t01 Vitis vinifera 69 5e-144 508
WERAM-Thc-0031 EOY22062 Theobroma cacao 68 8e-144 508
WERAM-Prp-0049 EMJ12067 Prunus persica 68 1e-143 507
WERAM-Pot-0045 POPTR_0004s09180.1 Populus trichocarpa 68 5e-143 505
WERAM-Mua-0066 GSMUA_Achr4P03250_001 Musa acuminata 66 3e-139 493
WERAM-Glm-0045 GLYMA05G00460.1 Glycine max 69 4e-139 492
WERAM-Sei-0109 Si029091m Setaria italica 63 4e-131 466
WERAM-Zem-0143 GRMZM2G457889_P01 Zea mays 63 4e-131 465
WERAM-Org-0078 ORGLA07G0164500.1 Oryza glaberrima 62 5e-131 465
WERAM-Ori-0088 BGIOSGA026083-PA Oryza indica 58 8e-131 464
WERAM-Orbr-0087 OB07G26850.1 Oryza brachyantha 63 1e-130 464
WERAM-Orgl-0076 OGLUM07G21150.1 Oryza glumaepatula 62 1e-130 464
WERAM-Ors-0072 OS07T0602200-01 Oryza sativa 58 1e-130 464
WERAM-Orr-0082 ORUFI07G22240.1 Oryza rufipogon 58 1e-130 464
WERAM-Lep-0079 LPERR07G18450.1 Leersia perrieri 62 1e-130 464
WERAM-Orni-0078 ONIVA07G19970.1 Oryza nivara 58 2e-130 463
WERAM-Orb-0079 OBART07G21300.1 Oryza barthii 63 6e-130 461
WERAM-Met-0112 KEH32016 Medicago truncatula 64 1e-129 461
WERAM-Sob-0036 Sb02g038550.1 Sorghum bicolor 62 4e-128 456
WERAM-Orp-0076 OPUNC07G19850.1 Oryza punctata 60 8e-128 454
WERAM-Sol-0055 Solyc03g115150.2.1 Solanum lycopersicum 62 5e-126 449
WERAM-Tra-0099 Traes_2DS_DFCAF1EA5.1 Triticum aestivum 59 1e-123 441
WERAM-Amt-0091 ERM99985 Amborella trichopoda 61 8e-123 438
WERAM-Brd-0010 BRADI1G22240.1 Brachypodium distachyon 59 5e-122 435
WERAM-Hov-0018 MLOC_16422.1 Hordeum vulgare 61 1e-120 431
WERAM-Tru-0053 TRIUR3_22556-P1 Triticum urartu 57 2e-116 417
WERAM-Orl-0040 KN538895.1_FGP007 Oryza longistaminata 65 6e-115 412
WERAM-Aet-0088 EMT31322 Aegilops tauschii 63 1e-111 400
WERAM-Sem-0022 EFJ08599 Selaginella moellendorffii 57 2e-103 374
WERAM-Php-0085 PP1S34_252V6.1 Physcomitrella patens 54 1e-99 361
WERAM-Ran-0209 ENSRNOP00000009295.5 Rattus norvegicus 42 7e-77 285
WERAM-Mum-0115 ENSMUSP00000033501.8 Mus musculus 42 1e-76 285
WERAM-Caf-0161 ENSCAFP00000022990.3 Canis familiaris 42 2e-76 283
WERAM-Aim-0139 ENSAMEP00000013236.1 Ailuropoda melanoleuca 41 7e-76 282
WERAM-Anc-0082 ENSACAP00000007918.3 Anolis carolinensis 43 9e-76 281
WERAM-Myl-0104 ENSMLUP00000008295.2 Myotis lucifugus 40 3e-75 280
WERAM-Eqc-0001 ENSECAP00000001121.1 Equus caballus 44 7e-75 279
WERAM-Mup-0158 ENSMPUP00000013557.1 Mustela putorius furo 41 8e-75 278
WERAM-Ict-0125 ENSSTOP00000012693.2 Ictidomys tridecemlineatus 45 1e-74 278
WERAM-Chs-0158 ENSCSAP00000009365.1 Chlorocebus sabaeus 45 1e-74 278
WERAM-Gog-0047 ENSGGOP00000004443.2 Gorilla gorilla 45 1e-74 278
WERAM-Paa-0049 ENSPANP00000006915.1 Papio anubis 45 1e-74 278
WERAM-Mam-0153 ENSMMUP00000021637.2 Macaca mulatta 45 2e-74 277
WERAM-Hos-0047 ENSP00000365804.2 Homo sapiens 45 2e-74 277
WERAM-Fec-0031 ENSFCAP00000002366.3 Felis catus 44 3e-74 277
WERAM-Caj-0022 ENSCJAP00000004409.2 Callithrix jacchus 44 6e-74 275
WERAM-Ocp-0057 ENSOPRP00000005096.1 Ochotona princeps 44 7e-74 275
WERAM-Loa-0047 ENSLAFP00000003196.3 Loxodonta africana 44 7e-74 275
WERAM-Cap-0109 ENSCPOP00000008049.2 Cavia porcellus 41 1e-73 275
WERAM-Orc-0102 ENSOCUP00000008741.3 Oryctolagus cuniculus 45 1e-73 274
WERAM-Mae-0111 ENSMEUP00000010640.1 Macropus eugenii 46 2e-73 274
WERAM-Dan-0022 ENSDNOP00000002136.3 Dasypus novemcinctus 44 3e-73 273
WERAM-Bot-0122 ENSBTAP00000017618.5 Bos taurus 45 4e-73 273
WERAM-Caa-0034 KGT64501 Candida albicans 41 5e-73 273
WERAM-Drm-0028 FBpp0290988 Drosophila melanogaster 41 1e-72 271
WERAM-Lac-0055 ENSLACP00000007918.1 Latimeria chalumnae 42 2e-72 271
WERAM-Xet-0155 ENSXETP00000050501.3 Xenopus tropicalis 41 3e-72 270
WERAM-Mod-0081 ENSMODP00000012731.2 Monodelphis domestica 45 4e-72 270
WERAM-Dio-0075 ENSDORP00000007462.1 Dipodomys ordii 42 7e-72 269
WERAM-Miv-0034 MVLG_04888T0 Microbotryum violaceum 42 1e-71 268
WERAM-Ptv-0077 ENSPVAP00000007213.1 Pteropus vampyrus 41 1e-71 268
WERAM-Tar-0042 ENSTRUP00000010127.1 Takifugu rubripes 44 1e-71 268
WERAM-Mel-0037 EGG03660 Melampsora laricipopulina 40 2e-71 267
WERAM-Ova-0124 ENSOARP00000012678.1 Ovis aries 45 3e-71 267
WERAM-Lem-0023 CBX90551 Leptosphaeria maculans 42 3e-71 266
WERAM-Ast-0014 CADATEAP00005667 Aspergillus terreus 41 4e-71 266
WERAM-Orn-0011 ENSONIP00000001061.1 Oreochromis niloticus 42 4e-71 266
WERAM-Sus-0177 ENSSSCP00000022636.1 Sus scrofa 40 5e-71 266
WERAM-Xim-0160 ENSXMAP00000013063.1 Xiphophorus maculatus 42 6e-71 266
WERAM-Pug-0031 EFP89333 Puccinia graminis 41 6e-71 266
WERAM-Meg-0084 ENSMGAP00000008226.2 Meleagris gallopavo 37 8e-71 265
WERAM-Pof-0022 ENSPFOP00000001799.2 Poecilia formosa 38 9e-71 265
WERAM-Asn-0017 CADANIAP00004063 Aspergillus nidulans 40 2e-70 264
WERAM-Coi-0028 EAS30926 Coccidioides immitis 42 2e-70 264
WERAM-Dar-0023 ENSDARP00000124246.1 Danio rerio 42 3e-70 263
WERAM-Leo-0130 ENSLOCP00000016135.1 Lepisosteus oculatus 42 4e-70 263
WERAM-Pem-0058 ENSPMAP00000006830.1 Petromyzon marinus 47 5e-70 263
WERAM-Otg-0144 ENSOGAP00000012420.2 Otolemur garnettii 45 6e-70 262
WERAM-Fia-0117 ENSFALP00000010126.1 Ficedula albicollis 37 6e-70 262
WERAM-Tum-0026 CAZ84932 Tuber melanosporum 40 1e-69 261
WERAM-Pytr-0015 EDU46537 Pyrenophora triticirepentis 41 1e-69 261
WERAM-Pyt-0023 EFQ89752 Pyrenophora teres 41 1e-69 261
WERAM-Ten-0019 ENSTNIP00000004593.1 Tetraodon nigroviridis 42 2e-69 261
WERAM-Gaga-0090 ENSGALP00000014065.4 Gallus gallus 37 2e-69 261
WERAM-Anp-0022 ENSAPLP00000003127.1 Anas platyrhynchos 38 3e-69 260
WERAM-Phn-0010 SNOT_01279 Phaeosphaeria nodorum 45 3e-69 260
WERAM-Asc-0002 CADACLAP00000048 Aspergillus clavatus 40 6e-69 259
WERAM-Kop-0012 CAY68916 Komagataella pastoris 43 8e-69 258
WERAM-Usm-0012 UM02102P0 Ustilago maydis 48 1e-68 258
WERAM-Orla-0199 ENSORLP00000022663.1 Oryzias latipes 39 1e-68 258
WERAM-Prc-0036 ENSPCAP00000003334.1 Procavia capensis 38 1e-68 258
WERAM-Pes-0105 ENSPSIP00000013270.1 Pelodiscus sinensis 42 1e-68 258
WERAM-Mao-0002 MGG_01076T0 Magnaporthe oryzae 40 2e-68 257
WERAM-Tut-0141 ENSTTRP00000011664.1 Tursiops truncatus 41 2e-68 257
WERAM-Asm-0181 ENSAMXP00000017644.1 Astyanax mexicanus 40 4e-68 256
WERAM-Tas-0117 ENSTSYP00000012457.1 Tarsius syrichta 42 7e-68 255
WERAM-Yal-0023 CAG79971 Yarrowia lipolytica 46 8e-68 255
WERAM-Put-0014 PTTG_07163P0 Puccinia triticina 40 1e-67 255
WERAM-Sah-0012 ENSSHAP00000001165.1 Sarcophilus harrisii 46 1e-67 255
WERAM-Scp-0036 SPBC800.03.1:pep Schizosaccharomyces pombe 41 1e-67 254
WERAM-Kll-0020 CAG99415 Kluyveromyces lactis 48 2e-67 254
WERAM-Pat-0158 ENSPTRP00000032389.5 Pan troglodytes 42 2e-67 254
WERAM-Poa-0196 ENSPPYP00000022747.2 Pongo abelii 45 2e-67 254
WERAM-Nol-0183 ENSNLEP00000020216.1 Nomascus leucogenys 42 2e-67 254
WERAM-Tag-0059 ENSTGUP00000004152.1 Taeniopygia guttata 39 3e-67 253
WERAM-Ora-0108 ENSOANP00000020481.2 Ornithorhynchus anatinus 40 3e-67 253
WERAM-Spr-0021 CBQ72644 Sporisorium reilianum 40 7e-67 252
WERAM-Lab-0047 EDQ99497 Laccaria bicolor 41 9e-67 252
WERAM-Chg-0033 EAQ86725 Chaetomium globosum 39 1e-66 251
WERAM-Scj-0031 EEB08679 Schizosaccharomyces japonicus 40 2e-66 251
WERAM-Ere-0042 ENSEEUP00000003697.1 Erinaceus europaeus 42 7e-66 249
WERAM-Cag-0018 CAG60803 Candida glabrata 46 9e-66 248
WERAM-Gam-0051 ENSGMOP00000005244.1 Gadus morhua 39 1e-65 248
WERAM-Crn-0010 AAW42071 Cryptococcus neoformans 43 2e-65 247
WERAM-Aso-0015 CADAORAP00001816 Aspergillus oryzae 39 2e-65 247
WERAM-Sac-0037 YNL021W Saccharomyces cerevisiae 46 3e-65 247
WERAM-Cae-0008 C10E2.3a Caenorhabditis elegans 42 6e-65 246
Created Date 25-Jun-2016