WERAM Information


Tag Content
WERAM ID WERAM-Asg-0032
Ensembl Protein ID AAS54753
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AGOS_AGR263C AAS54753 AAS54753
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 3.1 29
Organism Ashbya gossypii
Domain Profile
  HDAC HD2

Query: 50  TKITDEE-----LHQAKYQFSTKEAMEILLT----QGKDVEFTFEQDNVLQLGL------ 94
TK+T EE + QA + K ++L+ K V T QD Q+
Sbjct: 14 TKVTPEEDSLVHISQASLDCTVKSGESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDK 73
Query: 95 ---LLHSGTRATLELPYNKVQNVERYDVMSS 122
L HSGT+A + K N+E+ D SS
Sbjct: 74 EFELSHSGTKANVHFIGYKSPNIEQDDFTSS 104
Database: Arabidopsis_thaliana.TAIR10.31.pep.all.fa
Posted date: Jun 9, 2016 10:44 AM
Number of letters in database: 14,482,851
Number of sequences in database: 35,386

Lambda K H
0.316 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 35386
Number of Hits to DB: 7,565,246
Number of extensions: 310575
Number of successful extensions: 850
Number of sequences better than 10.0: 4
Number of HSP's gapped: 850
Number of HSP's successfully gapped: 4
Length of query: 270
Length of database: 14,482,851
Length adjustment: 99
Effective length of query: 171
Effective length of database: 10,979,637
Effective search space: 1877517927
Effective search space used: 1877517927
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)

Protein Sequence
(Fasta)
MSRKMDSERL ETHIKWRLFD IKNELYFVGL HCDDGLVLYI YSPFQDLVQT KITDEELHQA 60
KYQFSTKEAM EILLTQGKDV EFTFEQDNVL QLGLLLHSGT RATLELPYNK VQNVERYDVM 120
SSLSFWQMRS ILALTSMNEE LQNMLVEKDS AIEFLGYTAK EYGGSRLIRR WAPIGSQNYE 180
SLTKFKPGVW KKSWVEKYRW KSKSRRAALL ANDLEVLDQV EPSDYRPKTP TPEDTEAEDA 240
QGEFREDSQV TDSFLATLSE AEFSDRINSQ
Nucleotide Sequence
(Fasta)
ATGTCCAGAA AAATGGATTC TGAGCGACTG GAGACTCATA TCAAATGGAG GCTATTTGAT 60
ATTAAGAATG AACTATATTT TGTCGGCTTG CATTGTGATG ACGGCTTAGT GCTTTACATA 120
TATTCTCCGT TTCAGGATTT AGTACAGACA AAAATCACTG ATGAAGAGTT ACATCAAGCC 180
AAGTATCAGT TCAGCACCAA GGAAGCTATG GAAATCCTAC TGACCCAAGG AAAAGATGTG 240
GAGTTTACCT TTGAGCAGGA CAACGTGCTC CAGTTGGGGT TGCTATTGCA CAGTGGAACC 300
AGGGCTACAC TCGAACTACC CTATAATAAA GTACAAAATG TTGAACGGTA TGATGTCATG 360
AGTTCGCTGT CATTTTGGCA GATGCGAAGC ATTTTGGCAC TGACATCTAT GAACGAAGAA 420
CTACAAAATA TGTTAGTTGA AAAGGATTCA GCGATAGAGT TCCTGGGTTA TACTGCGAAG 480
GAATATGGCG GCAGCAGGCT CATAAGACGT TGGGCTCCCA TAGGCTCACA GAACTACGAA 540
TCCCTAACAA AGTTTAAACC TGGTGTTTGG AAGAAAAGTT GGGTAGAGAA GTATAGGTGG 600
AAATCTAAGT CAAGAAGGGC GGCGCTTTTA GCCAATGACT TGGAGGTGCT CGACCAGGTA 660
GAGCCGAGCG ATTACAGACC TAAAACACCT ACCCCAGAAG ATACAGAGGC CGAGGATGCG 720
CAAGGGGAAT TTCGAGAAGA TAGCCAGGTA ACTGATAGCT TCTTGGCTAC ACTTTCAGAA 780
GCTGAGTTTA GCGACAGGAT AAACTCTCAA TAA 814
Sequence Source Ensembl
Orthology
Created Date 25-Jun-2016