Tag |
Content |
WERAM ID |
WERAM-Sac-0013 |
Ensembl Protein ID |
YER164W |
Uniprot Accession |
P32657; CHD1_YEAST; D3DM72 |
Genbank Protein ID |
NP_011091.1 |
Protein Name |
Chromo domain-containing protein 1 |
Genbank Nucleotide ID |
NM_001179054.1 |
Gene Name |
Chd1;YER164W;SYGP-ORF4 |
Ensembl Information |
|
Details |
Type |
Family |
Domain |
Substrates |
AA |
References (PMIDs) |
Me_Reader |
DCD |
Chromo1 |
H3K4me |
K |
19948887 |
|
Status |
Reviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
Me_Reader |
DCD |
2.90e-27 |
81.6 |
211 |
221 |
|
Organism |
Saccharomyces cerevisiae |
NCBI Taxa ID |
559292 |
Functional Description (View)Functional Description
ATP-dependent chromatin-remodeling factor which functions as substrate recognition component of the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. It recognizes H3K4me. SAGA is involved in RNA polymerase II-dependent transcriptional regulation of approximately 10% of yeast genes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction (SPT3, SPT8 and SPT20) and promoter selectivity, interaction with transcription activators (GCN5, ADA2, ADA3 and TRA1), and chromatin modification through histone acetylation (GCN5) and deubiquitination (UBP8). SAGA acetylates nucleosomal histone H3 to some extent (to form H3K9ac, H3K14ac, H3K18ac and H3K23ac). SAGA interacts with DNA via upstream activating sequences (UASs). SLIK is proposed to have partly overlapping functions with SAGA. It preferentially acetylates methylated histone H3, at least after activation at the GAL1-10 locus. Acts in opposition to the FACT complex in regulating polymerase II transcription. Also required for efficient transcription by RNA polymerase I, and more specifically the pol I transcription termination step. Regulates negatively DNA replication. Not only involved in transcription-related chromatin-remodeling, but also required to maintain a specific chromatin configuration across the genome. |
ATP-dependent chromatin-remodeling factor which functions as substrate recognition component of the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. It recognizes H3K4me. SAGA is involved in RNA polymerase II-dependent transcriptional regulation of approximately 10% of yeast genes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction (SPT3, SPT8 and SPT20) and promoter selectivity, interaction with transcription activators (GCN5, ADA2, ADA3 and TRA1), and chromatin modification through histone acetylation (GCN5) and deubiquitination (UBP8). SAGA acetylates nucleosomal histone H3 to some extent (to form H3K9ac, H3K14ac, H3K18ac and H3K23ac). SAGA interacts with DNA via upstream activating sequences (UASs). SLIK is proposed to have partly overlapping functions with SAGA. It preferentially acetylates methylated histone H3, at least after activation at the GAL1-10 locus. Acts in opposition to the FACT complex in regulating polymerase II transcription. Also required for efficient transcription by RNA polymerase I, and more specifically the pol I transcription termination step. Regulates negatively DNA replication. Not only involved in transcription-related chromatin-remodeling, but also required to maintain a specific chromatin configuration across the genome.
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Domain Profile |
Me_Reader DCD
Chromo-2.txt 17 lhyLikWkdlp 27 ++LikW d YER164W 211 YEFLIKWTDES 221 58*****9854 PP Chromo-2.txt 1 mmverIinhsv....dkkGelhyLikWkdlpYdeaswesatvenkkypqlvqsfyeeresmrgee 61 +++erIi++++ d++++l+yL+kW++l+Ydea+we+at+++k +p++v++f+++++s++ ++ YER164W 285 HVPERIIDSQRasleDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNRENSKILPQ 349 689**********************************************************9987 PP
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Protein Sequence (Fasta) | MAAKDISTEV LQNPELYGLR RSHRAAAHQQ NYFNDSDDED DEDNIKQSRR KRMTTIEDDE 60 DEFEDEEGEE DSGEDEDEED FEEDDDYYGS PIKQNRSKPK SRTKSKSKSK PKSQSEKQST 120 VKIPTRFSNR QNKTVNYNID YSDDDLLESE DDYGSEEALS EENVHEASAN PQPEDFHGID 180 IVINHRLKTS LEEGKVLEKT VPDLNNCKEN YEFLIKWTDE SHLHNTWETY ESIGQVRGLK 240 RLDNYCKQFI IEDQQVRLDP YVTAEDIEIM DMERERRLDE FEEFHVPERI IDSQRASLED 300 GTSQLQYLVK WRRLNYDEAT WENATDIVKL APEQVKHFQN RENSKILPQY SSNYTSQRPR 360 FEKLSVQPPF IKGGELRDFQ LTGINWMAFL WSKGDNGILA DEMGLGKTVQ TVAFISWLIF 420 ARRQNGPHII VVPLSTMPAW LDTFEKWAPD LNCICYMGNQ KSRDTIREYE FYTNPRAKGK 480 KTMKFNVLLT TYEYILKDRA ELGSIKWQFM AVDEAHRLKN AESSLYESLN SFKVANRMLI 540 TGTPLQNNIK ELAALVNFLM PGRFTIDQEI DFENQDEEQE EYIHDLHRRI QPFILRRLKK 600 DVEKSLPSKT ERILRVELSD VQTEYYKNIL TKNYSALTAG AKGGHFSLLN IMNELKKASN 660 HPYLFDNAEE RVLQKFGDGK MTRENVLRGL IMSSGKMVLL DQLLTRLKKD GHRVLIFSQM 720 VRMLDILGDY LSIKGINFQR LDGTVPSAQR RISIDHFNSP DSNDFVFLLS TRAGGLGINL 780 MTADTVVIFD SDWNPQADLQ AMARAHRIGQ KNHVMVYRLV SKDTVEEEVL ERARKKMILE 840 YAIISLGVTD GNKYTKKNEP NAGELSAILK FGAGNMFTAT DNQKKLEDLN LDDVLNHAED 900 HVTTPDLGES HLGGEEFLKQ FEVTDYKADI DWDDIIPEEE LKKLQDEEQK RKDEEYVKEQ 960 LEMMNRRDNA LKKIKNSVNG DGTAANSDSD DDSTSRSSRR RARANDMDSI GESEVRALYK 1020 AILKFGNLKE ILDELIADGT LPVKSFEKYG ETYDEMMEAA KDCVHEEEKN RKEILEKLEK 1080 HATAYRAKLK SGEIKAENQP KDNPLTRLSL KKREKKAVLF NFKGVKSLNA ESLLSRVEDL 1140 KYLKNLINSN YKDDPLKFSL GNNTPKPVQN WSSNWTKEED EKLLIGVFKY GYGSWTQIRD 1200 DPFLGITDKI FLNEVHNPVA KKSASSSDTT PTPSKKGKGI TGSSKKVPGA IHLGRRVDYL 1260 LSFLRGGLNT KSPSADIGSK KLPTGPSKKR QRKPANHSKS MTPEITSSEP ANGPPSKRMK 1320 ALPKGPAALI NNTRLSPNSP TPPLKSKVSR DNGTRQSSNP SSGSAHEKEY DSMDEEDCRH 1380 TMSAIRTSLK RLRRGGKSLD RKEWAKILKT ELTTIGNHIE SQKGSSRKAS PEKYRKHLWS 1440 YSANFWPADV KSTKLMAMYD KITESQKK 1468Protein Fasta Sequence
>YER164W|Chd1;YER164W;SYGP-ORF4|Saccharomyces cerevisiae MAAKDISTEVLQNPELYGLRRSHRAAAHQQNYFNDSDDEDDEDNIKQSRRKRMTTIEDDEDEFEDEEGEEDSGEDEDEEDFEEDDDYYGSPIKQNRSKPKSRTKSKSKSKPKSQSEKQSTVKIPTRFSNRQNKTVNYNIDYSDDDLLESEDDYGSEEALSEENVHEASANPQPEDFHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMFTATDNQKKLEDLNLDDVLNHAEDHVTTPDLGESHLGGEEFLKQFEVTDYKADIDWDDIIPEEELKKLQDEEQKRKDEEYVKEQLEMMNRRDNALKKIKNSVNGDGTAANSDSDDDSTSRSSRRRARANDMDSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAAKDCVHEEEKNRKEILEKLEKHATAYRAKLKSGEIKAENQPKDNPLTRLSLKKREKKAVLFNFKGVKSLNAESLLSRVEDLKYLKNLINSNYKDDPLKFSLGNNTPKPVQNWSSNWTKEEDEKLLIGVFKYGYGSWTQIRDDPFLGITDKIFLNEVHNPVAKKSASSSDTTPTPSKKGKGITGSSKKVPGAIHLGRRVDYLLSFLRGGLNTKSPSADIGSKKLPTGPSKKRQRKPANHSKSMTPEITSSEPANGPPSKRMKALPKGPAALINNTRLSPNSPTPPLKSKVSRDNGTRQSSNPSSGSAHEKEYDSMDEEDCRHTMSAIRTSLKRLRRGGKSLDRKEWAKILKTELTTIGNHIESQKGSSRKASPEKYRKHLWSYSANFWPADVKSTKLMAMYDKITESQKK
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Nucleotide Sequence (Fasta) | ATGGCAGCCA AGGATATTTC TACTGAAGTG CTGCAAAATC CTGAACTATA TGGGCTGAGG 60 CGGTCACATA GAGCTGCTGC GCATCAACAA AACTACTTCA ACGATAGCGA TGATGAGGAC 120 GATGAAGATA ATATTAAACA GTCGAGGAGG AAGAGAATGA CCACGATTGA AGACGACGAA 180 GACGAATTTG AAGATGAAGA AGGCGAAGAA GATTCTGGAG AGGACGAAGA TGAGGAAGAT 240 TTTGAAGAAG ATGATGATTA TTATGGCTCT CCTATAAAAC AAAATCGATC AAAACCGAAA 300 TCAAGAACAA AATCAAAGTC TAAATCTAAG CCAAAATCTC AATCTGAAAA GCAATCTACA 360 GTGAAAATAC CAACAAGGTT TTCTAATCGT CAAAACAAAA CGGTAAATTA TAACATCGAT 420 TATAGCGATG ATGACCTCTT AGAATCTGAA GATGACTATG GTTCCGAGGA GGCTTTATCA 480 GAGGAAAATG TGCATGAAGC ATCTGCCAAT CCTCAACCAG AGGACTTCCA CGGTATTGAT 540 ATTGTTATCA ATCACAGACT AAAGACATCT TTGGAAGAAG GAAAGGTCTT GGAAAAGACT 600 GTTCCTGACC TCAATAACTG CAAGGAAAAT TATGAATTCT TAATCAAATG GACAGATGAA 660 TCTCATCTCC ACAATACCTG GGAAACTTAT GAATCCATTG GCCAAGTCCG TGGATTGAAG 720 AGGTTGGACA ACTATTGTAA GCAATTCATC ATCGAAGATC AACAAGTAAG ATTAGATCCA 780 TACGTTACCG CCGAAGATAT AGAGATCATG GACATGGAAC GTGAACGTAG GCTTGATGAA 840 TTTGAGGAGT TCCACGTGCC AGAAAGGATT ATTGATAGCC AACGTGCTTC GTTGGAAGAC 900 GGCACCTCAC AATTACAGTA TTTAGTTAAA TGGCGTCGTC TAAATTACGA CGAGGCTACT 960 TGGGAGAATG CCACAGATAT CGTGAAATTG GCACCTGAAC AAGTGAAACA TTTTCAAAAC 1020 AGAGAAAACT CTAAGATCCT CCCACAATAT TCCAGTAATT ATACTTCACA GAGACCGCGT 1080 TTTGAGAAGT TAAGCGTGCA ACCTCCGTTC ATTAAAGGTG GGGAATTAAG AGATTTTCAA 1140 CTAACTGGTA TTAATTGGAT GGCATTTTTG TGGTCCAAAG GTGATAATGG TATACTGGCA 1200 GATGAGATGG GCCTGGGAAA AACGGTCCAG ACTGTCGCCT TTATCAGTTG GCTGATATTT 1260 GCTCGTAGAC AAAACGGACC TCACATCATT GTCGTTCCTT TATCGACAAT GCCTGCCTGG 1320 TTGGATACTT TTGAGAAATG GGCGCCTGAT TTGAATTGTA TATGCTATAT GGGCAACCAA 1380 AAATCAAGAG ATACCATTCG AGAATATGAA TTTTACACCA ATCCAAGGGC AAAAGGGAAA 1440 AAAACAATGA AATTTAATGT TTTATTAACA ACATACGAGT ACATCTTAAA GGATCGTGCT 1500 GAATTAGGAA GTATAAAATG GCAATTTATG GCCGTTGACG AAGCTCATAG ACTAAAAAAT 1560 GCTGAATCAT CCCTTTATGA ATCATTAAAC AGTTTCAAGG TCGCCAACCG TATGTTAATC 1620 ACAGGCACAC CTCTTCAGAA TAATATTAAA GAGTTAGCTG CGTTGGTTAA TTTCCTAATG 1680 CCCGGAAGGT TTACGATTGA TCAGGAGATT GATTTTGAAA ACCAAGATGA AGAGCAAGAA 1740 GAATATATTC ATGATTTACA CCGAAGAATA CAGCCTTTTA TTCTTCGTCG GTTGAAGAAA 1800 GACGTAGAAA AATCACTTCC ATCAAAGACA GAGCGTATTT TAAGAGTTGA ATTGTCCGAC 1860 GTACAGACTG AGTACTATAA AAATATTCTG ACTAAAAACT ACTCTGCTTT AACTGCTGGA 1920 GCTAAAGGGG GTCATTTCTC TTTACTGAAT ATTATGAACG AGTTGAAAAA GGCATCGAAC 1980 CATCCATATC TCTTCGATAA TGCTGAAGAG CGCGTCTTAC AGAAATTTGG GGATGGTAAA 2040 ATGACTCGAG AAAACGTACT AAGAGGTTTG ATCATGTCTT CGGGTAAGAT GGTTCTTTTA 2100 GACCAATTAT TGACCAGATT GAAGAAAGAT GGGCACCGCG TGTTGATTTT TTCACAAATG 2160 GTCAGAATGC TTGACATTTT AGGCGACTAT TTATCCATTA AAGGTATTAA CTTCCAAAGG 2220 TTAGATGGTA CAGTACCATC TGCTCAAAGA AGGATATCTA TTGATCATTT CAACTCTCCG 2280 GATTCAAACG ACTTCGTATT TTTACTTTCT ACTCGTGCTG GTGGTTTGGG TATCAACTTA 2340 ATGACCGCCG ATACCGTTGT GATTTTTGAT TCCGATTGGA ATCCGCAAGC CGATTTACAA 2400 GCAATGGCTA GAGCTCATCG TATTGGCCAA AAAAATCACG TTATGGTGTA TAGGTTGGTT 2460 TCAAAAGACA CAGTAGAGGA AGAGGTATTA GAAAGAGCAC GGAAGAAAAT GATTCTGGAA 2520 TATGCTATTA TTTCTCTTGG AGTGACAGAT GGTAACAAAT ACACTAAGAA GAATGAACCA 2580 AATGCCGGTG AATTATCGGC AATCCTGAAG TTCGGTGCAG GCAATATGTT CACTGCCACA 2640 GACAACCAGA AAAAATTGGA GGATCTTAAC TTGGATGATG TTTTGAATCA TGCAGAGGAT 2700 CACGTTACTA CTCCAGACTT AGGAGAGTCG CATCTTGGCG GTGAAGAGTT TTTGAAGCAA 2760 TTCGAAGTGA CTGATTATAA AGCTGATATA GATTGGGATG ATATCATTCC AGAAGAAGAA 2820 CTAAAAAAAC TCCAAGATGA AGAGCAGAAA CGCAAGGATG AAGAATATGT TAAAGAACAA 2880 CTTGAAATGA TGAATAGAAG GGATAACGCC CTAAAAAAAA TAAAAAACAG TGTTAATGGT 2940 GATGGGACCG CCGCAAACTC AGATTCTGAC GACGATAGTA CTTCCAGATC TTCTAGAAGA 3000 AGAGCAAGAG CTAATGACAT GGACTCTATT GGTGAATCGG AGGTGAGAGC TTTGTATAAA 3060 GCTATTTTAA AATTTGGCAA CCTAAAGGAG ATTTTGGACG AGTTGATTGC AGATGGAACC 3120 CTGCCGGTCA AATCATTTGA AAAATACGGT GAAACTTACG ATGAAATGAT GGAAGCAGCT 3180 AAAGACTGTG TACACGAGGA AGAGAAAAAT AGAAAAGAAA TCTTGGAGAA ACTTGAGAAG 3240 CATGCTACCG CCTATAGAGC AAAGCTAAAA AGCGGTGAAA TAAAAGCAGA GAACCAACCA 3300 AAGGATAATC CGTTGACTAG ATTATCTTTA AAAAAAAGAG AAAAGAAAGC CGTCCTTTTC 3360 AACTTTAAAG GTGTTAAATC TTTAAACGCC GAATCTTTAC TAAGTAGAGT GGAGGATTTA 3420 AAGTACTTGA AGAACTTGAT AAATTCAAAC TACAAAGATG ATCCATTAAA GTTTAGCCTA 3480 GGCAACAACA CACCTAAGCC TGTACAGAAT TGGTCATCTA ATTGGACGAA AGAGGAAGAT 3540 GAGAAGCTAT TGATTGGTGT TTTCAAATAT GGATATGGTT CCTGGACACA AATAAGAGAC 3600 GATCCATTTC TAGGCATTAC TGATAAAATA TTCTTGAATG AAGTTCACAA TCCGGTAGCA 3660 AAAAAGTCGG CAAGCTCCTC TGATACAACA CCAACACCCT CAAAGAAAGG AAAGGGAATA 3720 ACGGGTTCTT CAAAAAAAGT ACCTGGTGCC ATTCACTTGG GCAGAAGAGT TGATTATCTA 3780 TTATCCTTCT TAAGAGGAGG CCTAAATACA AAGAGTCCCA GTGCTGACAT AGGCTCGAAA 3840 AAACTCCCTA CTGGTCCTTC CAAAAAGAGA CAAAGAAAAC CTGCTAATCA CAGCAAATCC 3900 ATGACTCCAG AAATTACAAG TTCTGAGCCT GCAAATGGCC CGCCAAGCAA ACGTATGAAA 3960 GCCCTCCCAA AAGGTCCTGC CGCCTTAATA AATAACACGA GATTGTCTCC AAACAGCCCC 4020 ACGCCCCCAT TAAAGTCCAA GGTTTCCAGA GATAATGGTA CAAGGCAATC AAGCAACCCC 4080 AGTAGCGGCA GCGCTCACGA AAAAGAATAT GACAGCATGG ATGAAGAAGA CTGTCGACAC 4140 ACAATGAGTG CAATACGTAC TTCTTTGAAG CGACTTAGAA GAGGCGGCAA AAGTCTTGAT 4200 CGTAAGGAAT GGGCCAAAAT TTTGAAGACC GAATTAACTA CGATTGGTAA TCATATCGAA 4260 TCGCAAAAGG GCTCATCGAG AAAGGCAAGC CCAGAAAAAT ATCGCAAGCA CCTTTGGTCT 4320 TACAGTGCCA ACTTTTGGCC TGCCGACGTT AAGAGTACAA AGCTGATGGC AATGTACGAC 4380 AAGATAACAG AGTCTCAAAA GAAGTGA
4408Nucleotide Fasta Sequence
>YER164W|DCD|Saccharomyces cerevisiae ATGGCAGCCAAGGATATTTCTACTGAAGTGCTGCAAAATCCTGAACTATATGGGCTGAGGCGGTCACATAGAGCTGCTGCGCATCAACAAAACTACTTCAACGATAGCGATGATGAGGACGATGAAGATAATATTAAACAGTCGAGGAGGAAGAGAATGACCACGATTGAAGACGACGAAGACGAATTTGAAGATGAAGAAGGCGAAGAAGATTCTGGAGAGGACGAAGATGAGGAAGATTTTGAAGAAGATGATGATTATTATGGCTCTCCTATAAAACAAAATCGATCAAAACCGAAATCAAGAACAAAATCAAAGTCTAAATCTAAGCCAAAATCTCAATCTGAAAAGCAATCTACAGTGAAAATACCAACAAGGTTTTCTAATCGTCAAAACAAAACGGTAAATTATAACATCGATTATAGCGATGATGACCTCTTAGAATCTGAAGATGACTATGGTTCCGAGGAGGCTTTATCAGAGGAAAATGTGCATGAAGCATCTGCCAATCCTCAACCAGAGGACTTCCACGGTATTGATATTGTTATCAATCACAGACTAAAGACATCTTTGGAAGAAGGAAAGGTCTTGGAAAAGACTGTTCCTGACCTCAATAACTGCAAGGAAAATTATGAATTCTTAATCAAATGGACAGATGAATCTCATCTCCACAATACCTGGGAAACTTATGAATCCATTGGCCAAGTCCGTGGATTGAAGAGGTTGGACAACTATTGTAAGCAATTCATCATCGAAGATCAACAAGTAAGATTAGATCCATACGTTACCGCCGAAGATATAGAGATCATGGACATGGAACGTGAACGTAGGCTTGATGAATTTGAGGAGTTCCACGTGCCAGAAAGGATTATTGATAGCCAACGTGCTTCGTTGGAAGACGGCACCTCACAATTACAGTATTTAGTTAAATGGCGTCGTCTAAATTACGACGAGGCTACTTGGGAGAATGCCACAGATATCGTGAAATTGGCACCTGAACAAGTGAAACATTTTCAAAACAGAGAAAACTCTAAGATCCTCCCACAATATTCCAGTAATTATACTTCACAGAGACCGCGTTTTGAGAAGTTAAGCGTGCAACCTCCGTTCATTAAAGGTGGGGAATTAAGAGATTTTCAACTAACTGGTATTAATTGGATGGCATTTTTGTGGTCCAAAGGTGATAATGGTATACTGGCAGATGAGATGGGCCTGGGAAAAACGGTCCAGACTGTCGCCTTTATCAGTTGGCTGATATTTGCTCGTAGACAAAACGGACCTCACATCATTGTCGTTCCTTTATCGACAATGCCTGCCTGGTTGGATACTTTTGAGAAATGGGCGCCTGATTTGAATTGTATATGCTATATGGGCAACCAAAAATCAAGAGATACCATTCGAGAATATGAATTTTACACCAATCCAAGGGCAAAAGGGAAAAAAACAATGAAATTTAATGTTTTATTAACAACATACGAGTACATCTTAAAGGATCGTGCTGAATTAGGAAGTATAAAATGGCAATTTATGGCCGTTGACGAAGCTCATAGACTAAAAAATGCTGAATCATCCCTTTATGAATCATTAAACAGTTTCAAGGTCGCCAACCGTATGTTAATCACAGGCACACCTCTTCAGAATAATATTAAAGAGTTAGCTGCGTTGGTTAATTTCCTAATGCCCGGAAGGTTTACGATTGATCAGGAGATTGATTTTGAAAACCAAGATGAAGAGCAAGAAGAATATATTCATGATTTACACCGAAGAATACAGCCTTTTATTCTTCGTCGGTTGAAGAAAGACGTAGAAAAATCACTTCCATCAAAGACAGAGCGTATTTTAAGAGTTGAATTGTCCGACGTACAGACTGAGTACTATAAAAATATTCTGACTAAAAACTACTCTGCTTTAACTGCTGGAGCTAAAGGGGGTCATTTCTCTTTACTGAATATTATGAACGAGTTGAAAAAGGCATCGAACCATCCATATCTCTTCGATAATGCTGAAGAGCGCGTCTTACAGAAATTTGGGGATGGTAAAATGACTCGAGAAAACGTACTAAGAGGTTTGATCATGTCTTCGGGTAAGATGGTTCTTTTAGACCAATTATTGACCAGATTGAAGAAAGATGGGCACCGCGTGTTGATTTTTTCACAAATGGTCAGAATGCTTGACATTTTAGGCGACTATTTATCCATTAAAGGTATTAACTTCCAAAGGTTAGATGGTACAGTACCATCTGCTCAAAGAAGGATATCTATTGATCATTTCAACTCTCCGGATTCAAACGACTTCGTATTTTTACTTTCTACTCGTGCTGGTGGTTTGGGTATCAACTTAATGACCGCCGATACCGTTGTGATTTTTGATTCCGATTGGAATCCGCAAGCCGATTTACAAGCAATGGCTAGAGCTCATCGTATTGGCCAAAAAAATCACGTTATGGTGTATAGGTTGGTTTCAAAAGACACAGTAGAGGAAGAGGTATTAGAAAGAGCACGGAAGAAAATGATTCTGGAATATGCTATTATTTCTCTTGGAGTGACAGATGGTAACAAATACACTAAGAAGAATGAACCAAATGCCGGTGAATTATCGGCAATCCTGAAGTTCGGTGCAGGCAATATGTTCACTGCCACAGACAACCAGAAAAAATTGGAGGATCTTAACTTGGATGATGTTTTGAATCATGCAGAGGATCACGTTACTACTCCAGACTTAGGAGAGTCGCATCTTGGCGGTGAAGAGTTTTTGAAGCAATTCGAAGTGACTGATTATAAAGCTGATATAGATTGGGATGATATCATTCCAGAAGAAGAACTAAAAAAACTCCAAGATGAAGAGCAGAAACGCAAGGATGAAGAATATGTTAAAGAACAACTTGAAATGATGAATAGAAGGGATAACGCCCTAAAAAAAATAAAAAACAGTGTTAATGGTGATGGGACCGCCGCAAACTCAGATTCTGACGACGATAGTACTTCCAGATCTTCTAGAAGAAGAGCAAGAGCTAATGACATGGACTCTATTGGTGAATCGGAGGTGAGAGCTTTGTATAAAGCTATTTTAAAATTTGGCAACCTAAAGGAGATTTTGGACGAGTTGATTGCAGATGGAACCCTGCCGGTCAAATCATTTGAAAAATACGGTGAAACTTACGATGAAATGATGGAAGCAGCTAAAGACTGTGTACACGAGGAAGAGAAAAATAGAAAAGAAATCTTGGAGAAACTTGAGAAGCATGCTACCGCCTATAGAGCAAAGCTAAAAAGCGGTGAAATAAAAGCAGAGAACCAACCAAAGGATAATCCGTTGACTAGATTATCTTTAAAAAAAAGAGAAAAGAAAGCCGTCCTTTTCAACTTTAAAGGTGTTAAATCTTTAAACGCCGAATCTTTACTAAGTAGAGTGGAGGATTTAAAGTACTTGAAGAACTTGATAAATTCAAACTACAAAGATGATCCATTAAAGTTTAGCCTAGGCAACAACACACCTAAGCCTGTACAGAATTGGTCATCTAATTGGACGAAAGAGGAAGATGAGAAGCTATTGATTGGTGTTTTCAAATATGGATATGGTTCCTGGACACAAATAAGAGACGATCCATTTCTAGGCATTACTGATAAAATATTCTTGAATGAAGTTCACAATCCGGTAGCAAAAAAGTCGGCAAGCTCCTCTGATACAACACCAACACCCTCAAAGAAAGGAAAGGGAATAACGGGTTCTTCAAAAAAAGTACCTGGTGCCATTCACTTGGGCAGAAGAGTTGATTATCTATTATCCTTCTTAAGAGGAGGCCTAAATACAAAGAGTCCCAGTGCTGACATAGGCTCGAAAAAACTCCCTACTGGTCCTTCCAAAAAGAGACAAAGAAAACCTGCTAATCACAGCAAATCCATGACTCCAGAAATTACAAGTTCTGAGCCTGCAAATGGCCCGCCAAGCAAACGTATGAAAGCCCTCCCAAAAGGTCCTGCCGCCTTAATAAATAACACGAGATTGTCTCCAAACAGCCCCACGCCCCCATTAAAGTCCAAGGTTTCCAGAGATAATGGTACAAGGCAATCAAGCAACCCCAGTAGCGGCAGCGCTCACGAAAAAGAATATGACAGCATGGATGAAGAAGACTGTCGACACACAATGAGTGCAATACGTACTTCTTTGAAGCGACTTAGAAGAGGCGGCAAAAGTCTTGATCGTAAGGAATGGGCCAAAATTTTGAAGACCGAATTAACTACGATTGGTAATCATATCGAATCGCAAAAGGGCTCATCGAGAAAGGCAAGCCCAGAAAAATATCGCAAGCACCTTTGGTCTTACAGTGCCAACTTTTGGCCTGCCGACGTTAAGAGTACAAAGCTGATGGCAATGTACGACAAGATAACAGAGTCTCAAAAGAAGTGA
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Sequence Source |
Ensembl |
Keyword |
KW-0002--3D-structure KW-0067--ATP-binding KW-0156--Chromatin regulator KW-0181--Complete proteome KW-0238--DNA-binding KW-0347--Helicase KW-0378--Hydrolase KW-1017--Isopeptide bond KW-0547--Nucleotide-binding KW-0539--Nucleus KW-0597--Phosphoprotein KW-1185--Reference proteome KW-0677--Repeat KW-0804--Transcription KW-0805--Transcription regulation KW-0832--Ubl conjugation --
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Interpro |
IPR000953--Chromo/shadow_dom IPR023780--Chromo_domain IPR016197--Chromodomain-like IPR023779--Chromodomain_CS IPR025260--DUF4208 IPR014001--Helicase_ATP-bd IPR001650--Helicase_C IPR009057--Homeodomain-like IPR027417--P-loop_NTPase IPR000330--SNF2_N
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PROSITE |
PS00598--CHROMO_1 PS50013--CHROMO_2 PS51192--HELICASE_ATP_BIND_1 PS51194--HELICASE_CTER
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Pfam |
PF00385--Chromo PF13907--DUF4208 PF00271--Helicase_C PF00176--SNF2_N
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Gene Ontology |
GO:0000790--C:nuclear chromatin GO:0030874--C:nucleolar chromatin GO:0000124--C:SAGA complex GO:0046695--C:SLIK (SAGA-like) complex GO:0005524--F:ATP binding GO:0031490--F:chromatin DNA binding GO:0003677--F:DNA binding GO:0008094--F:DNA-dependent ATPase activity GO:0004386--F:helicase activity GO:0035064--F:methylated histone binding GO:0070615--F:nucleosome-dependent ATPase activity GO:0000182--F:rDNA binding GO:0044212--F:transcription regulatory region DNA binding GO:0043044--P:ATP-dependent chromatin remodeling GO:0071894--P:histone H2B conserved C-terminal lysine ubiquitination GO:2000104--P:negative regulation of DNA-dependent DNA replication GO:1900050--P:negative regulation of histone exchange GO:0071441--P:negative regulation of histone H3-K14 acetylation GO:2000616--P:negative regulation of histone H3-K9 acetylation GO:0042766--P:nucleosome mobilization GO:0034728--P:nucleosome organization GO:0016584--P:nucleosome positioning GO:1902275--P:regulation of chromatin organization GO:0060303--P:regulation of nucleosome density GO:0001178--P:regulation of transcriptional start site selection at RNA polymerase II promoter GO:0006363--P:termination of RNA polymerase I transcription GO:0006369--P:termination of RNA polymerase II transcription GO:0006368--P:transcription elongation from RNA polymerase II promoter
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Orthology |
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Created Date |
25-Jun-2016 |