WERAM Information

Tag Content
WERAM ID WERAM-Art-0138
Ensembl Protein ID AT5G46550.1
Uniprot Accession Q9LS28; GTE12_ARATH; Q8GXL8
Genbank Protein ID NP_199467.2
Protein Name Transcription factor GTE12
Genbank Nucleotide ID NM_124025.3
Gene Name GTE12;At5g46550;F10E10.2
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT5G46550 AT5G46550.1 AT5G46550.1
Details
Type Family Domain Substrates AA References (PMIDs)
Ac_Reader Bromodomain Bromodomain K 12466527
Status Reviewed
Classification
Type Family E-value Score Start End
Ac_Reader Bromodomain 1.40e-22 80.4 82 147
Organism Arabidopsis thaliana
NCBI Taxa ID 3702
Functional Description
(View)
Domain Profile
  Ac_Reader Bromodomain
    BROMO.txt   2 ehevsepFrepvdpq.leipdYydiikePmdLstikerleegnYsspeefvkDvrlifnNakayne 66 
                  eh+  + F+epvdp   eipdY+++i++PmdL t+k++l ++ Ys+++ef++Dvrl f Na+ yn+
  AT5G46550.1  82 EHRGGWLFKEPVDPVkMEIPDYFNVIQKPMDLGTVKSKLLKNVYSNADEFAADVRLTFANAMHYNP 147
                  89999************************************************************8 PP
Protein Sequence
(Fasta)		MVAIPNIKIK FGPQGSVRTF QTLSDSSKKI EHVVTEDLSQ SSEKSKKRGG PKELDEVQPK 60
KKQRLDCDWS SQCLALLRFL MEHRGGWLFK EPVDPVKMEI PDYFNVIQKP MDLGTVKSKL 120
LKNVYSNADE FAADVRLTFA NAMHYNPLWN EVHTIAKEIN EIFEVRWESL MKKKVLRLSW 180
NEVREGYKRQ PVERDCSRRS STGTSASSGV GLTKPAKENS EKGSLSSKPV KVQSKKNTPA 240
VTPKALATCK CGRIICICLK SCSSFGSDVC SLTDCQLKNI SGAQASELDP QSNGSDTSKK 300
ERNGSLKSQL DKPSNSDLLG NELKTAFPAL PPVPPEKALR AAILKAQYAG TIIKAKHRIV 360
LGQNNKADLI RIQIEKEQME RAQREEKARI EAEMRAAKVA ERMRAQDELK QKRESQRLEI 420
AKMKKGFDFE RNNHSKLKKK FVKVCGCFSL TKARLLLEEL GLVLKNDYCP ELEVIGSEKF 480
DAMRMDDLEE GEIL 494
Nucleotide Sequence
(Fasta)		AAAAAAGAAA CTTCTATCGC CGCTTTGGCT TCCTCCTCCT CCTCACTCTG ACTCTCACAC 60
TCGATACTCC AAAATCTCTC ATACTGTTCC ATTGATTCTT CCTCTGGTTT TTATTTGTTC 120
TTGTAAGAAT GGTTGCGATA CCCAATATTA AGATAAAGTT TGGTCCTCAA GGTTCTGTCA 180
GAACATTCCA AACGTTGTCT GATAGTTCGA AGAAAATTGA GCATGTAGTG ACTGAAGATT 240
TATCTCAATC CTCGGAGAAA TCAAAGAAGC GTGGTGGGCC TAAAGAGCTA GATGAAGTTC 300
AACCTAAGAA GAAGCAGAGG CTGGATTGTG ATTGGTCTAG TCAATGTTTG GCATTGTTAC 360
GTTTTTTGAT GGAGCACCGT GGTGGATGGC TCTTTAAGGA GCCTGTTGAT CCTGTTAAAA 420
TGGAGATTCC TGATTACTTC AATGTCATAC AAAAGCCAAT GGATTTAGGC ACTGTCAAAT 480
CGAAACTTTT GAAGAATGTC TACAGTAATG CTGATGAGTT TGCAGCGGAT GTTCGGTTAA 540
CTTTTGCCAA TGCGATGCAT TATAATCCTC TGTGGAATGA GGTTCACACG ATTGCAAAGG 600
AGATTAATGA GATTTTTGAG GTTAGATGGG AATCACTCAT GAAGAAAAAG GTTTTGAGGT 660
TATCCTGGAA TGAAGTTAGA GAAGGTTATA AGAGACAGCC AGTTGAACGT GATTGTTCTA 720
GACGGAGCAG CACTGGAACA TCAGCTTCCT CTGGGGTGGG ATTGACGAAA CCAGCTAAAG 780
AGAACTCCGA AAAGGGTTCT CTTTCGTCCA AGCCAGTGAA AGTGCAGAGC AAAAAGAATA 840
CTCCTGCTGT GACGCCTAAA GCATTAGCAA CCTGTAAATG TGGTAGGATA ATTTGCATAT 900
GCCTCAAGTC CTGTAGCTCA TTTGGAAGTG ACGTTTGTTC GTTAACGGAT TGTCAATTAA 960
AGAACATTTC AGGTGCACAA GCGAGCGAGT TAGATCCTCA ATCTAATGGG TCTGACACTT 1020
CAAAGAAGGA GAGAAATGGT AGTCTCAAGT CTCAGCTTGA TAAACCTTCA AACAGTGATC 1080
TGTTGGGTAA TGAGTTGAAA ACGGCTTTTC CTGCTCTGCC GCCGGTACCT CCTGAGAAAG 1140
CTCTTCGTGC TGCAATACTC AAAGCTCAAT ATGCAGGAAC CATCATAAAA GCTAAACACA 1200
GAATAGTCCT TGGCCAGAAT AACAAAGCTG ATCTGATTAG AATACAGATA GAAAAGGAAC 1260
AGATGGAAAG AGCACAACGT GAAGAGAAAG CTAGAATTGA AGCCGAGATG AGAGCTGCTA 1320
AGGTTGCTGA ACGAATGAGG GCACAAGACG AGTTGAAACA GAAACGTGAG AGTCAACGGC 1380
TTGAAATAGC AAAGATGAAA AAAGGCTTCG ATTTTGAACG GAACAACCAC TCGAAATTGA 1440
AGAAAAAATT CGTTAAAGTC TGTGGCTGCT TTAGTCTGAC AAAAGCTCGG TTGTTACTTG 1500
AAGAGTTGGG TCTGGTTTTG AAAAATGATT ATTGTCCGGA ACTGGAAGTG ATCGGGTCAG 1560
AAAAATTTGA TGCAATGAGA ATGGACGATC TTGAGGAAGG AGAGATCCTT TAGAGTTTTC 1620
TCTATAAGAA AACCTCTTGG ATGTAATTTT TGACCATAAG GAATGCTTTG TAACCTTAAC 1680
TTTGGTTTTT TTTTTTTTTT GTGAACAACA ACCTTAACTT TGTTAATATA TGAAAATGCT 1740
ATT 1744
Sequence Source Ensembl
Keyword

KW-0103--Bromodomain
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0804--Transcription
KW-0805--Transcription regulation
--
Interpro

IPR001487--Bromodomain
PROSITE

PS50014--BROMODOMAIN_2
Pfam

PF00439--Bromodomain
Gene Ontology

GO:0005634--C:nucleus
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Arl-0014 Al_scaffold_0008_162 Arabidopsis lyrata 80 0.0 704
WERAM-Brr-0114 Bra022044.1-P Brassica rapa 53 4e-117 419
WERAM-Bro-0037 Bo2g130230.1 Brassica oleracea 52 3e-116 416
WERAM-Pot-0014 POPTR_0001s36530.1 Populus trichocarpa 37 1e-62 238
WERAM-Thc-0078 EOY27851 Theobroma cacao 37 3e-62 236
WERAM-Prp-0052 EMJ13574 Prunus persica 38 1e-60 231
WERAM-Glm-0192 GLYMA15G09620.1 Glycine max 35 3e-56 216
WERAM-Met-0039 AES64085 Medicago truncatula 38 1e-55 215
WERAM-Orbr-0085 OB07G21530.1 Oryza brachyantha 37 2e-52 203
WERAM-Lep-0111 LPERR11G14070.1 Leersia perrieri 37 3e-52 203
WERAM-Brd-0049 BRADI2G34827.1 Brachypodium distachyon 37 6e-52 202
WERAM-Orni-0076 ONIVA07G15550.1 Oryza nivara 37 4e-51 199
WERAM-Ori-0085 BGIOSGA025772-PA Oryza indica 37 1e-50 198
WERAM-Ors-0069 OS07T0507700-01 Oryza sativa 37 2e-50 197
WERAM-Org-0076 ORGLA07G0128000.1 Oryza glaberrima 37 4e-50 196
WERAM-Orb-0076 OBART07G15690.1 Oryza barthii 37 4e-50 196
WERAM-Orp-0073 OPUNC07G14460.1 Oryza punctata 36 1e-49 195
WERAM-Orgl-0073 OGLUM07G15360.1 Oryza glumaepatula 36 3e-49 193
WERAM-Orr-0078 ORUFI07G16200.1 Oryza rufipogon 36 3e-49 193
WERAM-Orl-0088 KN539984.1_FGP007 Oryza longistaminata 34 1e-45 181
WERAM-Sei-0123 Si032535m Setaria italica 36 8e-45 179
WERAM-Amt-0037 ERN14948 Amborella trichopoda 34 2e-40 164
WERAM-Viv-0064 VIT_10s0003g02240.t01 Vitis vinifera 52 2e-38 157
WERAM-Tra-0311 Traes_7BL_C3CE8540D.1 Triticum aestivum 35 6e-36 149
WERAM-Mua-0077 GSMUA_Achr4P27780_001 Musa acuminata 56 1e-35 148
WERAM-Sob-0081 Sb05g004810.1 Sorghum bicolor 63 2e-35 147
WERAM-Zem-0111 GRMZM2G317652_P01 Zea mays 61 1e-34 145
WERAM-Sot-0022 PGSC0003DMT400018643 Solanum tuberosum 54 2e-34 144
WERAM-Orm-0073 OMERI07G12670.1 Oryza meridionalis 55 5e-34 143
WERAM-Sol-0025 Solyc02g071510.2.1 Solanum lycopersicum 54 5e-34 142
WERAM-Hov-0055 MLOC_54045.1 Hordeum vulgare 45 5e-28 123
WERAM-Php-0015 PP1S13_29V6.1 Physcomitrella patens 48 3e-26 117
WERAM-Tru-0072 TRIUR3_27288-P1 Triticum urartu 48 1e-25 115
WERAM-Aet-0072 EMT26738 Aegilops tauschii 48 1e-25 115
WERAM-Sem-0069 EFJ33224 Selaginella moellendorffii 44 2e-24 110
Created Date 25-Jun-2016