WERAM Information

Tag Content
WERAM ID WERAM-Art-0077
Ensembl Protein ID AT3G24010.1
Uniprot Accession Q9LIQ6; ING1_ARATH; Q84WD2
Genbank Protein ID NP_566742.1
Protein Name PHD finger protein ING1
Genbank Nucleotide ID NM_113306.3
Gene Name ING1
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT3G24010 AT3G24010.1 AT3G24010.1
Details
Type Family Domain Substrates AA References (PMIDs)
Me_Reader PHD PHD-type H3K4me3/2 K 19154204
Status Reviewed
Classification
Type Family E-value Score Start End
Me_Reader PHD 8.50e-13 49.1 179 225
Organism Arabidopsis thaliana
NCBI Taxa ID 3702
Functional Description
(View)		 Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.
Domain Profile
  Me_Reader PHD
      PHD.txt   2 tiClvCgkddegekemvqCde..Cd.dwfHlkCvklplsslpegkswyCpsCk 51 
                  t+C+ C+++++ge  mv Cd+  C+ +wfH  Cv+l+  + p+g +wyCp+C 
  AT3G24010.1 179 TYCI-CNQVSFGE--MVACDNnaCKiEWFHFGCVGLK--EQPKG-KWYCPECA 225
                  89*9.*******6..**********************..*****.*******7 PP
Protein Sequence
(Fasta)		MSFAEEFEAN LVSLAHVLQK KYALLRDLDK SLQENQRQNE QRCEKEIEDI RRGRAGNITP 60
NTSLTKFSEE ALDEQKHSVR IADEKVTLAM QAYDLVDMHV QQLDQYMKKS DEVIRKEKEA 120
AAATLELENN GKAGNAGEGG RGGRKKTRLA TAASTAAAST GMTSSNMDLD LPVDPNEPTY 180
CICNQVSFGE MVACDNNACK IEWFHFGCVG LKEQPKGKWY CPECATVKKS RKGR 234
Nucleotide Sequence
(Fasta)		AACATATCCA TTTTGGGAAA CCCTAAATTC CCAAATGTCA TTCGCCGAGG AATTTGAAGC 60
TAATCTTGTT TCGCTGGCCC ATGTTTTGCA GAAGAAATAT GCTCTCCTGC GCGATTTGGA 120
TAAAAGTTTG CAAGAAAACC AACGACAAAA TGAACAACGC TGTGAAAAAG AAATAGAGGA 180
TATAAGAAGG GGCAGAGCTG GAAATATCAC ACCTAATACC TCTCTTACAA AGTTCTCAGA 240
GGAAGCACTT GATGAACAGA AACACAGTGT CCGGATTGCT GACGAGAAAG TCACACTGGC 300
TATGCAGGCA TATGATCTGG TGGATATGCA TGTTCAGCAA CTTGACCAGT ATATGAAAAA 360
ATCCGACGAA GTGATCCGCA AAGAGAAAGA AGCTGCCGCT GCGACATTAG AACTGGAGAA 420
CAACGGGAAA GCCGGGAATG CTGGTGAAGG TGGAAGAGGA GGGCGAAAAA AGACAAGGCT 480
AGCAACAGCA GCGTCAACAG CAGCAGCATC AACTGGGATG ACTTCAAGTA ATATGGATCT 540
GGATCTGCCT GTGGATCCAA ACGAACCAAC TTACTGCATC TGCAACCAAG TTAGCTTTGG 600
CGAGATGGTT GCGTGTGACA ACAATGCGTG CAAGATTGAG TGGTTCCATT TCGGTTGCGT 660
CGGTCTGAAA GAACAACCCA AGGGGAAATG GTACTGCCCG GAGTGTGCTA CAGTAAAGAA 720
GAGCAGGAAA GGTCGATGAT TTGAATGTTC ATGTCTGCTA ATAATCCAAA CAGCTTCATC 780
ATATCTACTG TAATCCAAAC AGTTTAGTAT ATCAACTCAT GTAAGATGTT ACCATGTTGA 840
CTATAAATTG TAGAAGTCTT GTTTCGTTCT TTGTTTGACA AAATTAATAA CTGAGTTTGG 900
GGT 904
Sequence Source Ensembl
Keyword

KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0341--Growth regulation
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0862--Zinc
KW-0863--Zinc-finger
--
Interpro

IPR028651--ING_fam
IPR024610--ING_N_histone_binding
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD
PROSITE

PS01359--ZF_PHD_1
PS50016--ZF_PHD_2
Pfam

PF12998--ING
Gene Ontology

GO:0005634--C:nucleus
GO:0035064--F:methylated histone binding
GO:0008270--F:zinc ion binding
GO:0016568--P:chromatin modification
GO:0040008--P:regulation of growth
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Arl-0064 fgenesh2_kg.3__ 2635__ AT3G24010.1 Arabidopsis lyrata 94 9e-90 326
WERAM-Bro-0124 Bo7g036450.1 Brassica oleracea 76 3e-84 308
WERAM-Brr-0075 Bra015016.1-P Brassica rapa 76 8e-84 306
WERAM-Thc-0053 EOY05425 Theobroma cacao 64 1e-74 276
WERAM-Glm-0112 GLYMA10G25620.1 Glycine max 62 7e-72 267
WERAM-Sot-0036 PGSC0003DMT400030294 Solanum tuberosum 63 7e-70 260
WERAM-Sol-0119 Solyc09g091190.2.1 Solanum lycopersicum 63 9e-70 260
WERAM-Pot-0039 POPTR_0003s17260.1 Populus trichocarpa 61 3e-68 255
WERAM-Prp-0084 EMJ28765 Prunus persica 60 1e-67 253
WERAM-Mua-0030 GSMUA_Achr1P03410_001 Musa acuminata 55 1e-66 249
WERAM-Viv-0027 VIT_05s0051g00350.t01 Vitis vinifera 66 4e-66 248
WERAM-Met-0017 KEH41192 Medicago truncatula 58 6e-65 244
WERAM-Amt-0044 ERN15806 Amborella trichopoda 55 3e-64 241
WERAM-Orr-0030 ORUFI03G03130.1 Oryza rufipogon 50 2e-57 219
WERAM-Orb-0031 OBART03G03390.1 Oryza barthii 50 2e-57 219
WERAM-Sob-0014 Sb01g047350.1 Sorghum bicolor 52 2e-56 215
WERAM-Php-0066 PP1S277_88V6.1 Physcomitrella patens 45 2e-46 182
WERAM-Sei-0135 Si037216m Setaria italica 44 3e-43 172
WERAM-Sem-0058 EFJ35540 Selaginella moellendorffii 39 3e-39 158
WERAM-Orbr-0038 OB03G13430.1 Oryza brachyantha 82 4e-33 138
WERAM-Brd-0037 BRADI1G75507.1 Brachypodium distachyon 81 5e-33 138
WERAM-Orp-0029 OPUNC03G03150.1 Oryza punctata 79 8e-33 137
WERAM-Lep-0035 LPERR03G03140.1 Leersia perrieri 79 3e-32 135
WERAM-Ors-0028 OS03T0143600-01 Oryza sativa 78 5e-32 134
WERAM-Orni-0030 ONIVA03G03130.1 Oryza nivara 78 5e-32 134
WERAM-Ori-0037 BGIOSGA011837-PA Oryza indica 78 5e-32 134
WERAM-Org-0031 ORGLA03G0031600.1 Oryza glaberrima 78 5e-32 134
WERAM-Orm-0033 OMERI03G03370.1 Oryza meridionalis 78 6e-32 134
WERAM-Orgl-0033 OGLUM03G03290.1 Oryza glumaepatula 78 7e-32 134
WERAM-Hov-0088 MLOC_66032.4 Hordeum vulgare 79 2e-31 132
WERAM-Tra-0133 Traes_4AL_78F1233CC.2 Triticum aestivum 79 3e-31 132
WERAM-Tru-0022 TRIUR3_10173-P1 Triticum urartu 79 6e-31 131
WERAM-Zem-0100 GRMZM2G178072_P01 Zea mays 76 4e-30 128
WERAM-Dar-0155 ENSDARP00000089186.2 Danio rerio 31 7e-29 124
WERAM-Gam-0212 ENSGMOP00000020563.1 Gadus morhua 30 1e-27 120
WERAM-Lac-0111 ENSLACP00000013747.2 Latimeria chalumnae 67 2e-27 119
WERAM-Ten-0032 ENSTNIP00000006039.1 Tetraodon nigroviridis 67 4e-27 118
WERAM-Tar-0017 ENSTRUP00000003694.1 Takifugu rubripes 67 5e-27 118
WERAM-Orn-0086 ENSONIP00000009520.1 Oreochromis niloticus 67 6e-27 118
WERAM-Mup-0077 ENSMPUP00000006997.1 Mustela putorius furo 67 6e-27 118
WERAM-Bot-0150 ENSBTAP00000021725.5 Bos taurus 67 6e-27 118
WERAM-Fec-0200 ENSFCAP00000020713.1 Felis catus 67 6e-27 117
WERAM-Anc-0074 ENSACAP00000006929.2 Anolis carolinensis 67 7e-27 117
WERAM-Ova-0192 ENSOARP00000019466.1 Ovis aries 67 7e-27 117
WERAM-Soa-0122 ENSSARP00000011714.1 Sorex araneus 67 7e-27 117
WERAM-Loa-0213 ENSLAFP00000019667.1 Loxodonta africana 67 7e-27 117
WERAM-Sah-0147 ENSSHAP00000015324.1 Sarcophilus harrisii 67 7e-27 117
WERAM-Ptv-0107 ENSPVAP00000009534.1 Pteropus vampyrus 67 8e-27 117
WERAM-Chs-0132 ENSCSAP00000006990.1 Chlorocebus sabaeus 67 8e-27 117
WERAM-Tag-0065 ENSTGUP00000004796.1 Taeniopygia guttata 67 8e-27 117
WERAM-Poa-0165 ENSPPYP00000020124.2 Pongo abelii 67 8e-27 117
WERAM-Pat-0164 ENSPTRP00000033606.4 Pan troglodytes 67 8e-27 117
WERAM-Nol-0127 ENSNLEP00000014397.1 Nomascus leucogenys 67 8e-27 117
WERAM-Hos-0029 ENSP00000320566.5 Homo sapiens 67 8e-27 117
WERAM-Caf-0038 ENSCAFP00000005192.3 Canis familiaris 67 8e-27 117
WERAM-Paa-0124 ENSPANP00000004010.1 Papio anubis 67 8e-27 117
WERAM-Otg-0055 ENSOGAP00000003761.2 Otolemur garnettii 67 8e-27 117
WERAM-Anp-0009 ENSAPLP00000001673.1 Anas platyrhynchos 67 8e-27 117
WERAM-Dan-0010 ENSDNOP00000001153.3 Dasypus novemcinctus 67 8e-27 117
WERAM-Aim-0073 ENSAMEP00000006322.1 Ailuropoda melanoleuca 67 8e-27 117
WERAM-Xet-0056 ENSXETP00000018004.3 Xenopus tropicalis 78 8e-27 117
WERAM-Mae-0124 ENSMEUP00000012568.1 Macropus eugenii 67 8e-27 117
WERAM-Sus-0124 ENSSSCP00000017603.2 Sus scrofa 67 8e-27 117
WERAM-Tut-0185 ENSTTRP00000015382.1 Tursiops truncatus 67 9e-27 117
WERAM-Orc-0015 ENSOCUP00000001622.3 Oryctolagus cuniculus 67 9e-27 117
WERAM-Ict-0046 ENSSTOP00000003622.2 Ictidomys tridecemlineatus 67 9e-27 117
WERAM-Eqc-0045 ENSECAP00000006448.1 Equus caballus 67 9e-27 117
WERAM-Myl-0177 ENSMLUP00000014873.2 Myotis lucifugus 67 9e-27 117
WERAM-Pes-0054 ENSPSIP00000007361.1 Pelodiscus sinensis 67 9e-27 117
WERAM-Ora-0058 ENSOANP00000008990.3 Ornithorhynchus anatinus 67 1e-26 117
WERAM-Caj-0180 ENSCJAP00000031565.1 Callithrix jacchus 67 1e-26 117
WERAM-Leo-0165 ENSLOCP00000019441.1 Lepisosteus oculatus 67 1e-26 117
WERAM-Fia-0124 ENSFALP00000010408.1 Ficedula albicollis 67 1e-26 117
WERAM-Ect-0116 ENSETEP00000013115.1 Echinops telfairi 67 1e-26 117
WERAM-Meg-0093 ENSMGAP00000008949.1 Meleagris gallopavo 67 1e-26 117
WERAM-Gaga-0094 ENSGALP00000014665.4 Gallus gallus 67 1e-26 117
WERAM-Gog-0044 ENSGGOP00000004268.2 Gorilla gorilla 67 2e-26 116
WERAM-Tas-0001 ENSTSYP00000000124.1 Tarsius syrichta 67 2e-26 116
WERAM-Asm-0105 ENSAMXP00000010482.1 Astyanax mexicanus 68 2e-26 116
WERAM-Gaa-0006 ENSGACP00000000841.2 Gasterosteus aculeatus 65 2e-26 116
WERAM-Pof-0162 ENSPFOP00000013201.1 Poecilia formosa 67 2e-26 116
WERAM-Xim-0108 ENSXMAP00000009576.1 Xiphophorus maculatus 65 2e-26 116
WERAM-Mum-0100 ENSMUSP00000031680.3 Mus musculus 65 2e-26 116
WERAM-Chh-0044 ENSCHOP00000005027.1 Choloepus hoffmanni 67 2e-26 116
WERAM-Cap-0197 ENSCPOP00000018334.1 Cavia porcellus 68 2e-26 116
WERAM-Mod-0036 ENSMODP00000005573.2 Monodelphis domestica 76 2e-26 116
WERAM-Ran-0034 ENSRNOP00000007476.4 Rattus norvegicus 65 2e-26 115
WERAM-Orla-0124 ENSORLP00000015230.1 Oryzias latipes 67 3e-26 115
WERAM-Ocp-0149 ENSOPRP00000015445.1 Ochotona princeps 67 3e-26 115
WERAM-Mam-0207 ENSMMUP00000019814.2 Macaca mulatta 76 5e-26 115
WERAM-Prc-0119 ENSPCAP00000010535.1 Procavia capensis 76 1e-25 114
WERAM-Tub-0041 ENSTBEP00000005072.1 Tupaia belangeri 65 1e-25 113
WERAM-Mim-0061 ENSMICP00000006050.1 Microcebus murinus 65 1e-25 113
WERAM-Dio-0088 ENSDORP00000008945.1 Dipodomys ordii 76 1e-25 113
WERAM-Drm-0046 FBpp0080103 Drosophila melanogaster 65 2e-25 113
WERAM-Pem-0004 ENSPMAP00000000234.1 Petromyzon marinus 70 3e-25 112
WERAM-Cii-0033 ENSCINP00000012930.3 Ciona intestinalis 76 3e-25 112
WERAM-Ere-0110 ENSEEUP00000011689.1 Erinaceus europaeus 65 4e-25 112
WERAM-Cis-0018 ENSCSAVP00000004240.1 Ciona savignyi 70 4e-25 112
Created Date 25-Jun-2016