WERAM Information


Tag Content
WERAM ID WERAM-Art-0026
Ensembl Protein ID AT1G69770.1
Uniprot Accession Q94F88; CMT3_ARATH; Q94FN4; Q9C9L8
Genbank Protein ID NP_177135.1
Protein Name DNA (cytosine-5)-methyltransferase CMT3
Genbank Nucleotide ID NM_105645.3
Gene Name CMT3,At1g69770,T6C23.3
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT1G69770 AT1G69770.1 AT1G69770.1
Details
Type Family Domain Substrates AA References (PMIDs)
Me_Reader BAH BAH H3K9me2 K 23021223
Me_Reader Chromodomain Chromo H3K9me2 K 23021223
Status Reviewed
Classification
Type Family E-value Score Start End
Me_Reader BAH 8.00e-39 133.5 109 227
Me_Reader Chromodomain 9.70e-18 64.8 382 443
Organism Arabidopsis thaliana
NCBI Taxa ID 3702
Functional Description
(View)
Involved in the CpXpG methylation and in gene silencing. Methylates preferentially transposon-related sequences. Functionally redundant to DRM1/DRM2 to maintain non-CpG methylation. Involved in RNA-directed DNA methylation.
Domain Profile
  Me_Reader BAH

      BAH.txt   2 llkkgdsvllqdderktpdvyiikiieLfeneneveikkfarvrwffRpseikesksrllykkkfanevfkselydtdseinleevigvvqvlplaey 99 
+++++d++++q++e+k+p +i+kiie+fe++n+ k+++++rwf+Rps+++++++++l+kk ++vf+se++dt +e++l e++++++++pl+e+
AT1G69770.1 109 IYELNDDAYVQSGEGKDP--FICKIIEMFEGANG---KLYFTARWFYRPSDTVMKEFEILIKK---KRVFFSEIQDT-NELGLLEKKLNILMIPLNEN 197
799***************..**************...*************************9...***********.******************** PP
BAH.txt 100 nkesipktekeddvflvdlslekkaekflkie 131
+ke+ip+te++d f++d++++ ++++f++i+
AT1G69770.1 198 TKETIPATENCD--FFCDMNYFLPYDTFEAIQ 227
************..***************996 PP

  Me_Reader Chromodomain

  Chromodomain.txt   1 Feverivd......kkelrkgeveYlVrWkGynksddtWepeenLl.ckelleefekkkekkk 56 
F+v++iv+ kk l++g + ++VrW++y++s+dtWep+e L+ c+ ++eef+k +k+
AT1G69770.1 382 FTVDKIVGisfgvpKKLLKRGLY-LKVRWLNYDDSHDTWEPIEGLSnCRGKIEEFVKLGYKSG 443
99*********************.**********************************99986 PP

Protein Sequence
(Fasta)
MAPKRKRPAT KDDTTKSIPK PKKRAPKRAK TVKEEPVTVV EEGEKHVARF LDEPIPESEA 60
KSTWPDRYKP IEVQPPKASS RKKTKDDEKV EIIRARCHYR RAIVDERQIY ELNDDAYVQS 120
GEGKDPFICK IIEMFEGANG KLYFTARWFY RPSDTVMKEF EILIKKKRVF FSEIQDTNEL 180
GLLEKKLNIL MIPLNENTKE TIPATENCDF FCDMNYFLPY DTFEAIQQET MMAISESSTI 240
SSDTDIREGA AAISEIGECS QETEGHKKAT LLDLYSGCGA MSTGLCMGAQ LSGLNLVTKW 300
AVDMNAHACK SLQHNHPETN VRNMTAEDFL FLLKEWEKLC IHFSLRNSPN SEEYANLHGL 360
NNVEDNEDVS EESENEDDGE VFTVDKIVGI SFGVPKKLLK RGLYLKVRWL NYDDSHDTWE 420
PIEGLSNCRG KIEEFVKLGY KSGILPLPGG VDVVCGGPPC QGISGHNRFR NLLDPLEDQK 480
NKQLLVYMNI VEYLKPKFVL MENVVDMLKM AKGYLARFAV GRLLQMNYQV RNGMMAAGAY 540
GLAQFRLRFF LWGALPSEII PQFPLPTHDL VHRGNIVKEF QGNIVAYDEG HTVKLADKLL 600
LKDVISDLPA VANSEKRDEI TYDKDPTTPF QKFIRLRKDE ASGSQSKSKS KKHVLYDHHP 660
LNLNINDYER VCQVPKRKGA NFRDFPGVIV GPGNVVKLEE GKERVKLESG KTLVPDYALT 720
YVDGKSCKPF GRLWWDEIVP TVVTRAEPHN QVIIHPEQNR VLSIRENARL QGFPDDYKLF 780
GPPKQKYIQV GNAVAVPVAK ALGYALGTAF QGLAVGKDPL LTLPEGFAFM KPTLPSELA 839
Nucleotide Sequence
(Fasta)
AGGGTTTCAT TTCGTCTCTT TATCTTCCTT CGTCTCTTTA GCTTCCTTCG ATTCTCTGAC 60
TCAATCATGG CGCCGAAGCG AAAGAGACCT GCGACAAAGG ATGACACTAC CAAATCCATT 120
CCCAAACCGA AGAAGAGAGC TCCTAAGCGA GCTAAGACGG TGAAAGAAGA GCCGGTGACA 180
GTGGTCGAGG AAGGGGAAAA GCATGTTGCG AGGTTTCTAG ACGAGCCAAT TCCAGAATCT 240
GAAGCGAAGA GTACCTGGCC TGACAGATAC AAACCGATTG AGGTACAGCC ACCTAAGGCT 300
TCGTCAAGAA AGAAGACGAA GGATGACGAA AAAGTTGAGA TCATTCGTGC TCGATGCCAT 360
TATAGACGTG CGATTGTTGA TGAGCGTCAG ATATATGAGC TGAATGATGA TGCTTATGTA 420
CAGTCTGGTG AGGGAAAGGA TCCCTTCATT TGTAAAATCA TTGAAATGTT TGAAGGGGCT 480
AATGGGAAAC TGTATTTCAC GGCTCGGTGG TTTTATAGAC CTTCTGATAC TGTAATGAAA 540
GAGTTCGAGA TTCTGATCAA GAAAAAGCGT GTGTTTTTCT CTGAGATACA AGATACAAAT 600
GAATTGGGAT TACTTGAAAA GAAGCTGAAC ATTTTGATGA TTCCCTTGAA TGAAAATACT 660
AAAGAGACTA TCCCTGCAAC AGAAAACTGT GACTTTTTCT GTGACATGAA CTATTTCTTG 720
CCTTACGATA CATTTGAAGC TATACAACAA GAAACCATGA TGGCTATAAG TGAAAGTTCA 780
ACAATATCCA GTGATACTGA TATAAGAGAA GGAGCTGCTG CCATATCAGA GATTGGAGAA 840
TGTTCTCAAG AAACAGAAGG TCACAAAAAG GCAACTTTGC TTGACCTTTA CTCCGGCTGT 900
GGAGCTATGT CGACAGGGTT GTGCATGGGT GCACAACTGT CTGGTTTGAA CCTCGTCACT 960
AAATGGGCTG TTGACATGAA TGCACATGCA TGTAAAAGCT TGCAGCATAA CCACCCAGAG 1020
ACAAACGTGA GAAACATGAC CGCAGAAGAT TTCTTGTTTC TGCTTAAGGA GTGGGAGAAG 1080
CTATGCATTC ATTTCTCTTT GAGAAATAGT CCAAATTCAG AAGAATATGC CAACCTTCAC 1140
GGTTTGAATA ATGTTGAGGA CAATGAAGAT GTCAGCGAGG AGAGTGAAAA TGAAGATGAT 1200
GGAGAAGTTT TTACTGTTGA CAAGATTGTT GGTATTTCCT TCGGAGTCCC TAAAAAGTTA 1260
TTGAAACGTG GACTTTATTT GAAGGTAAGG TGGCTGAATT ATGATGATTC TCATGATACA 1320
TGGGAGCCTA TTGAAGGACT CAGTAATTGC CGGGGTAAAA TTGAAGAGTT CGTTAAACTT 1380
GGATATAAAT CTGGCATCCT TCCGTTACCA GGAGGTGTTG ATGTTGTCTG CGGTGGGCCA 1440
CCATGCCAAG GAATCAGTGG TCACAACCGC TTCAGGAACT TATTGGACCC TCTAGAAGAT 1500
CAGAAAAACA AGCAGCTTTT GGTGTATATG AACATTGTAG AATATTTGAA GCCTAAGTTC 1560
GTTTTGATGG AAAACGTCGT TGACATGCTG AAGATGGCTA AGGGCTATCT TGCACGGTTT 1620
GCTGTTGGAC GCCTTCTACA GATGAATTAC CAAGTGAGGA ATGGAATGAT GGCAGCTGGA 1680
GCTTATGGGC TTGCTCAGTT TCGTTTGAGG TTCTTTCTAT GGGGTGCACT CCCTAGTGAG 1740
ATAATTCCGC AGTTCCCACT TCCAACACAT GATCTAGTTC ATAGAGGAAA TATTGTCAAG 1800
GAGTTTCAGG GAAACATAGT AGCCTATGAT GAAGGACATA CTGTGAAGTT AGCAGACAAG 1860
CTTTTGTTGA AGGATGTGAT TTCTGATCTT CCTGCAGTTG CCAACAGTGA AAAAAGAGAC 1920
GAGATTACAT ATGACAAAGA TCCCACAACG CCATTTCAAA AGTTCATCAG ATTGAGAAAG 1980
GATGAAGCGT CAGGTTCACA ATCAAAGTCC AAGTCCAAAA AGCATGTCTT ATATGATCAT 2040
CACCCTCTTA ATCTTAATAT AAATGACTAT GAACGGGTTT GTCAGGTCCC CAAGAGAAAG 2100
GGAGCGAATT TTAGGGACTT TCCTGGTGTT ATTGTTGGAC CTGGTAATGT AGTCAAGTTG 2160
GAAGAGGGAA AGGAAAGGGT CAAACTTGAA TCTGGAAAAA CATTGGTTCC CGATTATGCC 2220
TTAACATATG TCGATGGGAA ATCATGCAAA CCTTTTGGTC GTCTTTGGTG GGACGAAATT 2280
GTCCCCACTG TTGTCACACG GGCAGAACCC CACAACCAGG TGATCATTCA TCCAGAGCAA 2340
AATCGGGTTT TATCCATTCG AGAAAATGCG AGACTCCAAG GCTTTCCTGA TGACTACAAA 2400
CTCTTTGGCC CACCCAAACA GAAGTACATT CAAGTAGGTA ACGCTGTAGC TGTGCCAGTA 2460
GCGAAGGCCC TTGGATATGC TTTGGGAACA GCTTTCCAGG GACTCGCAGT TGGGAAAGAT 2520
CCACTTCTTA CTCTGCCTGA AGGTTTTGCA TTCATGAAGC CAACTCTTCC TTCCGAGCTT 2580
GCATGAACAC TGTTGATTCA TCGCATTTTT CGATTTATCT TCTATTCATT GTTTTCCTAG 2640
GATTTATCTT TAGACCATTT GCTGCGGAAT TTGGATTTGT TTTGTTTAAG TTTCACGACT 2700
TTCAAGTTTA GCAACTCTGA ATTTCTGGTA ACTTTGTTTT AATCAGATGT TATGGATTTG 2760
TGGG 2765
Sequence Source Ensembl
Keyword

KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0489--Methyltransferase
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0949--S-adenosyl-L-methionine
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0808--Transferase
--

Interpro

IPR001025--BAH_dom
IPR018117--C5_DNA_meth_AS
IPR001525--C5_MeTfrase
IPR000953--Chromo/shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR023779--Chromodomain_CS
IPR029063--SAM-dependent_MTases

PROSITE

PS51038--BAH
PS00094--C5_MTASE_1
PS00598--CHROMO_1
PS50013--CHROMO_2
PS51679--SAM_MT_C5

Pfam

PF01426--BAH
PF00385--Chromo
PF00145--DNA_methylase

Gene Ontology

GO:0005634--C:nucleus
GO:0003682--F:chromatin binding
GO:0003886--F:DNA (cytosine-5-)-methyltransferase activity
GO:0003677--F:DNA binding
GO:0090116--P:C-5 methylation of cytosine
GO:0006342--P:chromatin silencing
GO:0006306--P:DNA methylation
GO:0010425--P:DNA methylation on cytosine within a CNG sequence
GO:0051567--P:histone H3-K9 methylation
GO:0045814--P:negative regulation of gene expression, epigenetic
GO:0006351--P:transcription, DNA-templated
GO:0010069--P:zygote asymmetric cytokinesis in embryo sac

Orthology
Created Date 25-Jun-2016