WERAM Information

Tag Content
WERAM ID WERAM-Arl-0017
Ensembl Protein ID fgenesh1_pg.C_scaffold_1001378
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
fgenesh1_pg.C_scaffold_1001378 fgenesh1_pg.C_scaffold_1001378 fgenesh1_pg.C_scaffold_1001378
Status Unreviewed
Classification
Type Family E-value Score Start End
Me_Reader Me_Reader_other 1.00e-127 452
Organism Arabidopsis lyrata
Domain Profile
  Me_Reader Me_Reader_other
Query: 1   MAAPDDSSHYFTEFTLAEIRDSCFVILLYCSSSAKIVDMENLYKELGDQSLHKDFCQTVA 60
           MAA DDSSHYFTEFTL+EI                 VDMENLYKELGDQSLHKDFCQTVA
Sbjct: 1   MAASDDSSHYFTEFTLSEI-----------------VDMENLYKELGDQSLHKDFCQTVA 43
Query: 61  XXXXXXXXXXXXXXXXVNRNGKSTVTWKQIQSWFQEKLKQQSQPKFKTLPSPPLQIHDLS 120
                           VNRNGKS++TWKQ+Q WFQEKLK QSQPK KTLPSPPLQIHDLS
Sbjct: 44  STFSCS----------VNRNGKSSITWKQVQIWFQEKLKHQSQPKSKTLPSPPLQIHDLS 93
Query: 121 NPSCYAANA---------TFVQTRKGKASDLADLAFEAKSARDYAWYDVSSFLTYRVLRT 171
           NPS YA+NA         TFVQTRKGKASDLADLAFEAKSARDYAWYDVSSFLTYRVLRT
Sbjct: 94  NPSSYASNASNATFVGNSTFVQTRKGKASDLADLAFEAKSARDYAWYDVSSFLTYRVLRT 153
Query: 172 GELEVRVRFSGFDNRHDEWVNVKTSVRERSIPLEPSECGRVNIGDLLLCFQERDDQALYC 231
           GELEVRVRFSGFDNRHDEWVNVKTSVRERSIP+EPSECGRVN+GDLLLCFQER+DQALYC
Sbjct: 154 GELEVRVRFSGFDNRHDEWVNVKTSVRERSIPVEPSECGRVNVGDLLLCFQEREDQALYC 213
Query: 232 DGHVVNIKRGIHDHRRCNCVFLVRYDLDNTEEPLGLEKICRRPDE 276
           DGHV+NIKRGIHDH RCNCVFLVRY+LDNTEE LGLE+ICRRP+E
Sbjct: 214 DGHVLNIKRGIHDHARCNCVFLVRYELDNTEESLGLERICRRPEE 258
Protein Sequence
(Fasta)		MAAPDDSSHY FTEFTLAEIR DSCFVILLYC SSSAKIVDME NLYKELGDQS LHKDFCQTVA 60
STFSFMSSSI VSQSCSVNRN GKSTVTWKQI QSWFQEKLKQ QSQPKFKTLP SPPLQIHDLS 120
NPSCYAANAT FVQTRKGKAS DLADLAFEAK SARDYAWYDV SSFLTYRVLR TGELEVRVRF 180
SGFDNRHDEW VNVKTSVRER SIPLEPSECG RVNIGDLLLC FQERDDQALY CDGHVVNIKR 240
GIHDHRRCNC VFLVRYDLDN TEEPLGLEKI CRRPDE 276
Nucleotide Sequence
(Fasta)		ATGGCTGCTC CCGATGATTC CTCTCACTAT TTCACCGAGT TTACCTTGGC CGAGATTAGA 60
GATTCATGCT TTGTGATCTT ATTATATTGC TCTTCTTCTG CGAAGATTGT AGACATGGAG 120
AATCTGTATA AGGAGCTCGG TGATCAATCT CTCCACAAAG ATTTCTGTCA AACTGTTGCT 180
TCCACTTTTA GCTTTATGTC TTCTTCCATT GTTTCTCAAA GTTGTTCTGT GAATCGGAAT 240
GGAAAATCCA CGGTAACCTG GAAACAGATA CAGAGTTGGT TCCAGGAGAA GCTGAAGCAG 300
CAATCTCAAC CCAAATTCAA AACTTTGCCA TCTCCCCCTT TGCAGATTCA TGACTTATCT 360
AATCCCAGTT GTTATGCTGC AAATGCTACC TTTGTTCAAA CACGCAAAGG TAAAGCCTCT 420
GATTTAGCTG ATCTGGCTTT TGAGGCTAAA TCAGCACGGG ACTACGCGTG GTATGACGTA 480
TCTTCGTTCC TTACTTATAG AGTTCTTCGC ACTGGTGAAT TGGAAGTGCG TGTACGCTTT 540
TCTGGGTTCG ACAACCGACA CGATGAGTGG GTGAACGTCA AAACATCAGT GCGTGAGCGG 600
TCTATTCCTT TAGAACCATC AGAGTGTGGG AGAGTGAATA TTGGAGACCT GCTTCTATGT 660
TTCCAAGAAA GGGATGATCA AGCATTGTAC TGTGATGGTC ATGTTGTGAA TATTAAGAGA 720
GGGATTCATG ATCACAGGAG ATGTAACTGC GTGTTTCTTG TTCGCTACGA CCTTGACAAT 780
ACAGAGGAAC CGCTGGGATT AGAAAAAATT TGCCGCCGCC CTGATGAGTG A 832
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Art-0011 AT1G15215.2 Arabidopsis thaliana 80 2e-127 452
WERAM-Bro-0092 Bo5g020650.1 Brassica oleracea 68 6e-105 377
WERAM-Brr-0130 Bra026155.1-P Brassica rapa 68 6e-105 377
WERAM-Thc-0076 EOY26911 Theobroma cacao 51 3e-66 248
WERAM-Pot-0006 POPTR_0001s19000.1 Populus trichocarpa 50 1e-62 237
WERAM-Viv-0062 VIT_09s0002g03660.t01 Vitis vinifera 47 1e-62 236
WERAM-Glm-0091 GLYMA08G21560.5 Glycine max 46 3e-54 209
WERAM-Sot-0007 PGSC0003DMT400006487 Solanum tuberosum 40 7e-51 197
WERAM-Met-0171 KEH18213 Medicago truncatula 44 1e-50 196
WERAM-Sol-0058 Solyc03g120940.2.1 Solanum lycopersicum 40 7e-50 194
WERAM-Prp-0090 EMJ17222 Prunus persica 63 4e-49 192
WERAM-Orbr-0105 OB09G14330.1 Oryza brachyantha 38 2e-43 173
WERAM-Org-0096 ORGLA09G0048600.1 Oryza glaberrima 37 4e-43 172
WERAM-Orni-0098 ONIVA09G05900.1 Oryza nivara 37 4e-43 172
WERAM-Ori-0106 BGIOSGA029938-PA Oryza indica 37 4e-43 172
WERAM-Orr-0103 ORUFI09G07320.1 Oryza rufipogon 36 7e-43 171
WERAM-Orgl-0096 OGLUM09G07230.2 Oryza glumaepatula 36 1e-42 170
WERAM-Orm-0090 OMERI09G05210.2 Oryza meridionalis 36 2e-41 166
WERAM-Orb-0100 OBART09G06730.1 Oryza barthii 35 2e-37 153
Created Date 25-Jun-2016