WERAM Information

Tag Content
WERAM ID WERAM-Zem-0037
Ensembl Protein ID GRMZM2G049155_P01
Gene Name rif1 Zm.4786
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
GRMZM2G049155 GRMZM2G049155_T01 GRMZM2G049155_P01
GRMZM2G049155 GRMZM2G049155_T02 GRMZM2G049155_P02
Status Unreviewed
Classification
Type Family E-value Score Start End
Me_Reader Tudor 0.029 16.2 240 272
Organism Zea mays
Domain Profile
  Me_Reader Tudor
          Tudor.txt   3 kvGlrVvakwssdGyfYsgkiVvkghrvesgeeyysi 39 
                         vG +V+ +w +d+ fY++ i       +++  +y+ 
  GRMZM2G049155_P01 240 LVGRKVMSRWPEDNSFYEAVI----SDYNAETGLYVL 272
                        69******************9....444444444444 PP
Protein Sequence
(Fasta)		MDYGPSDSSG TDDDLPQLPH RSIRGSGRVS GNGRTIVPAG SYARAPTDME AQIQQLEQEA 60
YCSVLRAFKA QSDAITWEKE GLMTELRKEL RVSDKAHREL LNKVNNDNII CSIREWRSTG 120
GLQASMSNNP QPIHDPVPSP TTSGRKRQKT SQSVPALPAP PAMHSQQLAT PTQPSSSTAR 180
KAVPPVPKGK KTKPGQKVPG GSAAKPMPSS AGPSGRGPHM NRNFPGGSAP EAQAQNVDPL 240
VGRKVMSRWP EDNSFYEAVI SDYNAETGLY VLVYDINTAN ETWEWVDLKE MGPEDIRWKE 300
DDSGIDPVVY LRSRGAPSSG VRKPTGRGGP MPGSGRGRGL PKNMSRKDFP PPQNGVGKRS 360
SDDIDILHTE SLIKEVEKVF SVSNPDPQEV EKAKKALKEQ EQSLIDAIAR LAEASDGESD 420
GLNRGRRNLY AGNQHQANYV DDMPVGDQAD AM 452
Nucleotide Sequence
(Fasta)		AGTGTGTCTT AAGTGGTCCA GCAACGTTTG CCGCATGCAG CCGCTTCAAG TCCGACGATT 60
TTCTCCTTTC TCTCTCTCTC TATTTTTCAC TCTAGACCGA AATCGGAGCG CCCGATACCA 120
TACCAATAGC AGCAGAGCAG TAGCAGCACA GCTCCCTCCC CCGTCCTCTC CAAATCTCGC 180
CGGATTCCGT CCACCGCCAA GCCCTCGCAT CTGCCGCAGG TTCGCGTCTG TGCCCGAGCG 240
TGTTGCACTG CCGGTGGTGT TGGTGGTGGT TGGCGGAGTT GCCGCCGAGG GTCGGTCATG 300
GACTACGGGC CCTCTGACAG CAGCGGAACT GATGATGATC TTCCACAACT TCCACATAGG 360
AGTATCAGAG GCAGCGGACG TGTTAGTGGT AATGGGAGAA CTATTGTTCC TGCCGGTTCA 420
TATGCTAGAG CACCAACTGA CATGGAAGCA CAAATTCAAC AACTTGAGCA AGAAGCATAT 480
TGTTCAGTCC TTCGTGCATT CAAAGCCCAG TCTGATGCCA TTACATGGGA GAAGGAAGGT 540
CTCATGACTG AACTTAGGAA GGAACTAAGA GTATCTGACA AAGCACACAG GGAGCTGTTA 600
AATAAAGTCA ACAACGATAA TATTATATGT AGCATAAGGG AATGGAGATC AACAGGAGGG 660
CTTCAAGCAA GCATGTCCAA TAACCCACAA CCGATTCATG ACCCTGTTCC AAGTCCTACC 720
ACCTCTGGCC GTAAGAGGCA AAAGACATCT CAATCTGTTC CTGCTTTACC TGCACCTCCT 780
GCAATGCATT CACAACAGCT GGCTACACCA ACACAGCCAT CGTCTTCAAC TGCTAGGAAA 840
GCAGTACCCC CAGTCCCTAA AGGCAAAAAG ACGAAACCAG GTCAGAAGGT ACCAGGTGGC 900
TCTGCAGCCA AGCCTATGCC ATCTTCAGCA GGTCCTAGTG GAAGAGGACC ACACATGAAT 960
AGGAATTTTC CAGGTGGTTC TGCTCCTGAA GCTCAAGCTC AGAATGTCGA TCCATTGGTT 1020
GGTCGTAAAG TGATGAGCCG GTGGCCTGAA GATAATAGTT TTTATGAAGC AGTCATATCT 1080
GATTATAATG CTGAAACGGG CCTTTATGTG CTGGTTTATG ACATTAATAC GGCAAATGAA 1140
ACCTGGGAGT GGGTTGATCT TAAAGAGATG GGACCTGAAG ACATAAGATG GAAAGAGGAT 1200
GACTCTGGGA TAGACCCTGT GGTGTATCTG CGCAGCCGAG GTGCCCCAAG TAGTGGGGTC 1260
AGGAAGCCAA CAGGTCGCGG TGGGCCCATG CCAGGTTCTG GAAGAGGAAG AGGATTACCG 1320
AAGAACATGT CTAGGAAAGA TTTTCCACCT CCACAAAATG GTGTTGGCAA GAGAAGTTCC 1380
GATGACATTG ATATCCTTCA TACTGAGAGC CTAATAAAAG AGGTGGAGAA AGTTTTTAGC 1440
GTTAGCAATC CTGATCCACA GGAAGTAGAA AAGGCAAAGA AAGCACTGAA GGAGCAAGAA 1500
CAGTCATTGA TTGACGCCAT AGCAAGGCTT GCTGAGGCAT CAGATGGTGA AAGTGATGGG 1560
CTCAATCGTG GGCGAAGGAA CTTGTATGCT GGTAACCAGC ATCAAGCAAA CTATGTTGAT 1620
GACATGCCCG TTGGTGACCA AGCTGATGCC ATGTAAACAC TGCATGAACA TGTATACACA 1680
ACATAATATA ACTGTCTGTT GTACAATCCA TTGCAAATAT TTGTTCTGGA TTTAGGTCTC 1740
TGTAAGCTAA GTATCGTTCG TTTCGGGAAA CTAATTTTTT TAGAACAGTA ATTCAGAATG 1800
CTGACAAGTA AAGCTTGTAG ATGTTTGTTT CTTTCTCTAG TTTTTTTGTT AGTGTGGTCT 1860
CATGTTCTAT ATGCATGATA AAAGGAAAAA AATCACCTTT GTAAAGCACT AA 1913
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Sob-0023 Sb02g018570.1 Sorghum bicolor 93 0.0 737
WERAM-Hov-0091 MLOC_68440.1 Hordeum vulgare 73 4e-154 541
WERAM-Tra-0240 Traes_5DL_F30C83ADE.2 Triticum aestivum 73 2e-153 540
WERAM-Aet-0094 EMT19648 Aegilops tauschii 73 2e-153 540
WERAM-Tru-0020 TRIUR3_09050-P1 Triticum urartu 73 3e-153 538
WERAM-Sei-0050 Si013860m Setaria italica 67 9e-128 454
WERAM-Bro-0066 Bo4g021690.1 Brassica oleracea 50 4e-84 309
WERAM-Brr-0021 Bra004832.1-P Brassica rapa 47 3e-66 249
Created Date 25-Jun-2016