WERAM Information

Tag Content
WERAM ID WERAM-Chr-0015
Ensembl Protein ID EDP01441
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
CHLREDRAFT_149734 EDP01441 EDP01441
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 0.09 35
HDAC HD2 3.8 30
Organism Chlamydomonas reinhardtii
Domain Profile
  HDAC HD2
Query: 112 FACGDCDRTFASQQGLRRHLQAKH 135
           F C  C RTF S+ GL+ H +AKH
Sbjct: 267 FGCKSCTRTFTSEMGLQSHTKAKH 290
  HDAC HD2
Query: 113 ACGDCDRTFASQQGLRRHLQAKH 135
           +CG C +TF S   L  H +AKH
Sbjct: 219 SCGSCKKTFNSGNALESHNKAKH 241
  Database: Arabidopsis_thaliana.TAIR10.31.pep.all.fa
    Posted date:  Jun 9, 2016 10:44 AM
  Number of letters in database: 14,482,851
  Number of sequences in database:  35,386
  
Lambda     K      H
   0.319    0.131    0.390 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 35386
Number of Hits to DB: 3,383,219
Number of extensions: 53897
Number of successful extensions: 214
Number of sequences better than 10.0: 3
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 3
Length of query: 413
Length of database: 14,482,851
Length adjustment: 103
Effective length of query: 310
Effective length of database: 10,838,093
Effective search space: 3359808830
Effective search space used: 3359808830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Protein Sequence
(Fasta)		MATNLCAECG IKLSRPEYQK HMQEVHGVSI QHDSDDERDK EAPAAGEDGA DAKPQRQRRR 60
GGNKEGAAEG AEGAEEGAAG EDGARPPRER RRRGGRKPAG EGADGEAPAG DFACGDCDRT 120
FASQQGLRRH LQAKHPESEA TAAAVAAAAA EAPAAGARRG GRGRGRGTKA EAGEGAADGA 180
AADGAEGAKP AAGGRSRGRG GRTGRGRGAA AAPVPDDPTA AAAMAAAAAK AAIGGAAAEP 240
AAERQVTLFR CKQCEQGFKS RNRAREHVIE AHAADVPAEA PAEAPGVKPP PPEGVELPPG 300
RRAPAPVVPV PADALLEVAE VTTKRAPRAS RRRKPRTANG DEPSGDAAEG EEGAAEGGRA 360
RGGRRGGRGG DAAAPAAGGD AAAASGDAPA PAGGAKRSGA PTDELAALGI TAS 413
Nucleotide Sequence
(Fasta)		TTCAGACTGT TTAACACGCA ATCAACCAAC GAAGCTCTAA AAGTATTTCC TGGAGACTCT 60
GCTGTCGAGT TCGCGTTTCG ACGAATTCCC AAAACAACGC TTCCGGAAGA GCTGCCTAAG 120
CGTAGGTGAG ATGAAGGGAC ACATACAGGC ACAGATCTGA TGCGAACGTT CCGCAGCGGG 180
GTTGGCGAGG CCTCAGGCCG TTGCCGGTGT TCGCGGGCGC CTGCTCGCAC TGGGTGATCT 240
GGATGCCTTG TGCAGCAGTT GCATGTTTGT TTGACTGACT CAGAGTCAAC GTGGGTCTCG 300
CGTCCCTGCT CGGAGCTTGG CGGTCTCCGG AATGGCCACC GTTTCACCCG ACATCGATCC 360
CGTGCCCTGG ACAACCGCTG GCCGCTGCCT GGCGTCTCAC TATCCCTATC TCTGCATGCA 420
TATGCTGTAA CCCGCCAGGT CGGATCGGCC ATGGCGACCA ACCTGTGCGC CGAGTGCGGC 480
ATAAAGCTGT CGCGGCCCGA GTATCAGAAG CACATGCAGG AGGTGCACGG CGTCTCCATC 540
CAGCACGACA GCGACGACGA GCGCGATAAG GAGGCCCCGG CCGCCGGCGA GGACGGCGCC 600
GATGCCAAGC CGCAGCGCCA GCGCCGCCGT GGCGGCAACA AGGAGGGCGC CGCCGAGGGC 660
GCGGAGGGTG CCGAGGAGGG CGCCGCCGGC GAGGACGGCG CCCGGCCTCC GCGCGAGCGT 720
CGGCGCCGCG GTGGGCGCAA GCCCGCCGGT GAGGGTGCAG ATGGCGAGGC TCCCGCTGGC 780
GACTTCGCCT GCGGCGACTG CGACCGCACC TTCGCCAGCC AGCAGGGCCT GAGGCGCCAC 840
CTGCAGGCCA AGCACCCTGA GTCTGAGGCG ACGGCCGCTG CGGTGGCCGC CGCGGCAGCC 900
GAGGCCCCGG CGGCCGGCGC GCGCCGTGGT GGCCGCGGCC GTGGCCGCGG CACCAAGGCC 960
GAGGCCGGTG AGGGCGCCGC GGATGGCGCG GCAGCTGACG GCGCGGAGGG TGCCAAGCCC 1020
GCGGCGGGTG GTCGCAGCCG TGGCCGTGGC GGCCGCACCG GCCGCGGCCG CGGCGCCGCC 1080
GCTGCCCCCG TGCCGGACGA CCCCACCGCC GCCGCTGCAA TGGCTGCGGC TGCGGCCAAG 1140
GCGGCGATTG GCGGCGCGGC CGCTGAGCCC GCGGCGGAGC GTCAGGTGAC GCTGTTCCGC 1200
TGCAAGCAGT GCGAGCAGGG CTTCAAGAGC CGCAATCGCG CCCGCGAGCA CGTTATTGAG 1260
GCACACGCCG CCGACGTGCC CGCGGAGGCC CCTGCCGAGG CGCCGGGCGT CAAGCCGCCG 1320
CCGCCGGAGG GCGTGGAGCT GCCGCCGGGC CGCCGCGCGC CGGCGCCGGT GGTGCCCGTG 1380
CCCGCTGACG CCCTGCTGGA GGTCGCGGAG GTGACCACCA AGCGCGCGCC CCGCGCGTCG 1440
CGCCGGCGGA AGCCGCGCAC GGCCAACGGC GACGAGCCGT CAGGCGATGC GGCGGAGGGC 1500
GAGGAGGGCG CCGCGGAGGG CGGCCGCGCG CGCGGCGGTC GCCGCGGTGG TCGCGGCGGC 1560
GACGCCGCGG CTCCGGCTGC CGGTGGTGAC GCGGCCGCTG CCTCCGGTGA TGCGCCCGCG 1620
CCTGCTGGCG GCGCCAAGCG CAGTGGCGCG CCCACGGACG AGCTGGCGGC TCTGGGCATC 1680
ACCGCGAGCT AAGCAGTGCG GTCCCCAACT GCACTTGCCG GGACACTGGA GCTGACTGAC 1740
GCGTGCAGCT GTTCACTTGG CCGCCGGCGA TTGCCTGGTG GCGGCGAGGA GCAGCGACGG 1800
AGCCCGTGGA TGGCTTGTCG GGAGCCGGCG CAGCAGTAGC GGCAGTGCAA ATGGCGGTGC 1860
TGGGGTCAAG CACAAGGAAG CGTGTTGGGG CACATATAGT GGCCACGACG GGGCACGGCA 1920
GCGGCGCAAG CCGTGGGGGC GCGACCGGCT GACACCGGGC CATGCACTAC GGTAGGGGTT 1980
GCTGCTGCTG ATGCGCAGTA GCAATAGCCA CGCCAGCGGC AGCAGCAGCA GCACTGCCGT 2040
GGTGCCATCC CTGGGTCGGC AGGCACGCCC GGACGTGACC CGCAGCCTTG CTTCCGGAAG 2100
TGCAGCATGC AGAAGTTGAG TGAGAGAGGC GAGAGAAAGC GTTGCATGGG CCCTTTGCGG 2160
GTGCGCCACC TGTGCCACGG CTTGGCCGGT CGCATGGCGC TCCTGCTCAC TTCCAGTTTG 2220
CATCACAGGG CTGCTTGCCG GCCATGGCGG GACTGGCGGC GTAGGTGCGT CTGTAGACAG 2280
CCGGAGCCAG GACCACACAG GCGGGGATGC CCTGGAGCCA AGAGGGGGGC TGCGGGGATG 2340
GATGCATTGT CGCAGCAGTC AGTGTTGCCG GTGTGGTCAC CCTAAGCCTA GCAGAGCCTG 2400
CAACGAGTGG GCACGTGGGG CATGCGGTGC GCGCACGCTG GCAGGCGTGA GAGGATCGGA 2460
CAAGTGGCGG CGTGCTGCGC ACACCAGCTG CGCGTATGAC AAGCGGTTTT GAGATGGGCG 2520
GGACTTGAGC TGTGGCAGTG GGAAGGCTGC GGCACCTGCC GGCATTCTGG CACTGCGCAA 2580
TGGCGTTGCG GCCGAAGGTT CGGACGATTA CCGGTACATG AGGAGTTGGC GTTGCATGGA 2640
GGTCAGTGTG TGGGAGAGTG TGCGGTAGGG AAGTAGGGCC TACTGGCATC GGCGCGTTCA 2700
GTGAACATGT GTGGTGGCTG GCCACATGCA ATTGGCGGTA GGGATGCTCG CGAAGTGGCT 2760
TGGCACGGCG CGCGAAGAGG ACAGGTCACA AGCGCGACAG GAAGGCCGTG CGTGGGTAAC 2820
CTGAATACAG CTGAGCATCC CGCCATCTCC GACTCCGGAA TGATGTAAAG TTCACGCACC 2880
CG 2883
Sequence Source Ensembl
Orthology
Created Date 25-Jun-2016