WERAM Information

Tag Content
WERAM ID WERAM-Art-0142
Ensembl Protein ID AT5G55040.2
Uniprot Accession Q8VY17; Q8VY17_ARATH
Genbank Protein ID NP_001119438.1; NP_200315.2
Protein Name DNA-binding bromodomain-containing protein
Genbank Nucleotide ID NM_001125966.1; NM_124886.2
Gene Name At5g55040;BRD13
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT5G55040 AT5G55040.2 AT5G55040.2
AT5G55040 AT5G55040.1 AT5G55040.1
Details
Type Family Domain Substrates AA References (PMIDs)
Ac_Reader Bromodomain Bromodomain K 12466527
Status Reviewed
Classification
Type Family E-value Score Start End
Ac_Reader Bromodomain 4.90e-22 78.6 200 269
Organism Arabidopsis thaliana
NCBI Taxa ID 3702
Functional Description
(View)
Domain Profile
  Ac_Reader Bromodomain
    BROMO.txt   2 ehevsepFrepvdpqleipdYydiikePmdLstikerleegnYsspeefvkDvrlifnNakaynenkssvq 72 
                  ++++  ++ epvdp  e+pdY+d+i++Pmd+st++++l +g Ys++ee+  Dv li++Na++yn+ ++ ++
  AT5G55040.2 200 KKDIYGVYAEPVDP-EELPDYHDMIEHPMDFSTVRKKLANGSYSTLEELESDVLLICSNAMQYNSSDTVYY 269
                  567778899*****.6**************************************************99886 PP
Protein Sequence
(Fasta)		MSQIARRRRK GRPSKADLAA RRSSSSPRES GYELRRGQRQ RNVRYNFDFD DYFDEEEEDE 60
VEEEKKRQKK LKQVLKLNQS RARADPPVKS RARVRHASDY EEEDEEDDEA EEEEEEVSEK 120
RQVKKRKLNR QDEEEEEEEE KDYDVEEEEE EEEGHADSEE EDDKERKRRS ASGNQCDHSS 180
ETTPILDKKS LELILDKLQK KDIYGVYAEP VDPEELPDYH DMIEHPMDFS TVRKKLANGS 240
YSTLEELESD VLLICSNAMQ YNSSDTVYYK QARTIQEMGK RKFEKARLKI KRAEKELKTD 300
EKVKPDSSVK KQVRQPFSRN GLEAVGSDFS SGANLASGGA SQNEPVSTQI GGHEKHSYTD 360
VLFEGNTSLV DSLEKAEDLS SGKGLFGKCG RKLSVVEEDR RATYEDSDQQ GDRSESIFTT 420
FESEIKQFVA VGLHAEHAYG RSLARFAATL GPVAWKIASQ RIEQALPADF KFGRGWVGEY 480
EPLPTPVLLF ETCTPKEPPK KASVFSKRKS NAATKTNETL FKTPLPAKEQ QGSRPVRDGN 540
HAFPFPASIG ALSEGSPSFV ATQVGNLKSM SQHEYRNPSQ LDFVKPQNRI PQQVELNLPP 600
PAEQTNSGSG CVLENQSFGK SDTVASYRSS SDMMRNMSST DSEHYKHQMT TNGIFPGGLR 660
NGKVSPGVNN RMFDLSTDFA NQMSRTATSS QQPMRQQSQS HEEQAQIMRN FNERARTQHN 720
STYNHPKADA PPKISSPQSA RSEDSGNASV AAARAWMSIG AGGNNKQTFE NASNPKSSQI 780
SAESLYNPSR EHFHQQAFKP RDAEETQFHP QRNGFPFQTF VHQPVHGMMN GGYQPFQNNR 840
PIVFPQMAAP TSDFSRFHVQ SQWRGGITPQ VQLKQRQENF NLPPDLNIGV HSPDSPAKQS 900
SGVRVDSQQP DLALQL 916
Nucleotide Sequence
(Fasta)		AGAAAGTTGC AGAGAGAGAG AGAGAGACCT TAGCTGTATA GAGAGAGAAA GGGATTGGGT 60
GTTGTGCACT GAGTTCGATA GAGAAGAAGA AGAAGAAGAA GAAGAAGAAG ATGAGTCAGA 120
TCGCGAGACG ACGGAGGAAA GGTCGTCCGT CGAAGGCAGA TCTGGCGGCG CGGCGTAGTA 180
GTTCATCTCC GCGTGAATCG GGATATGAGC TCCGGCGAGG TCAAAGGCAG CGAAATGTGA 240
GGTATAACTT CGATTTCGAC GATTACTTCG ACGAGGAGGA AGAGGATGAG GTTGAAGAGG 300
AGAAGAAGAG ACAGAAGAAG CTGAAACAAG TTCTTAAGCT GAACCAGAGC CGTGCTAGAG 360
CTGACCCTCC TGTTAAGAGT CGAGCGCGTG TGAGACACGC GTCTGATTAT GAAGAAGAAG 420
ACGAAGAAGA TGATGAAGCA GAGGAGGAGG AGGAAGAAGT AAGTGAGAAG AGGCAAGTCA 480
AGAAGAGGAA ACTTAACCGT CAAGACGAAG AAGAGGAAGA GGAAGAAGAG AAGGATTACG 540
ATGTGGAAGA GGAGGAAGAA GAAGAAGAAG GTCACGCTGA TTCTGAGGAA GAGGATGATA 600
AGGAAAGGAA GAGGAGGAGC GCTTCTGGGA ATCAGTGTGA TCATTCTTCA GAAACAACAC 660
CTATCCTTGA CAAGAAGTCT TTGGAGTTGA TTCTTGACAA ACTTCAAAAG AAAGACATCT 720
ATGGTGTGTA TGCAGAACCT GTTGATCCTG AAGAGCTTCC TGATTATCAT GATATGATAG 780
AGCATCCCAT GGATTTTTCC ACAGTGAGGA AGAAGCTTGC GAATGGATCA TATTCTACGT 840
TGGAAGAGCT CGAGAGCGAT GTCTTATTGA TTTGCTCAAA TGCAATGCAA TACAATTCCT 900
CAGACACTGT CTACTATAAA CAGGCAAGGA CTATTCAGGA AATGGGAAAG CGGAAGTTCG 960
AGAAGGCAAG GCTTAAGATT AAACGAGCTG AAAAAGAGCT TAAAACAGAT GAAAAGGTGA 1020
AACCTGACAG CTCTGTGAAG AAGCAAGTGA GACAGCCATT CAGTCGAAAT GGTCTAGAGG 1080
CCGTTGGTTC TGATTTCTCA TCTGGGGCGA ACCTTGCTAG TGGAGGAGCT TCTCAAAACG 1140
AGCCGGTTTC AACTCAAATC GGCGGACATG AAAAGCACAG CTACACGGAT GTGCTTTTTG 1200
AGGGCAACAC ATCATTAGTA GACAGTCTGG AGAAAGCAGA AGACTTATCA TCTGGGAAGG 1260
GTCTCTTTGG TAAGTGTGGG AGGAAGCTGT CGGTTGTTGA GGAAGACCGC CGTGCAACCT 1320
ATGAAGATTC TGATCAGCAG GGCGATAGAT CGGAGTCCAT ATTCACAACA TTTGAGAGTG 1380
AAATCAAGCA GTTTGTTGCT GTAGGGCTTC ATGCAGAACA TGCGTATGGT AGGAGCCTTG 1440
CACGTTTTGC TGCAACTCTT GGACCCGTTG CATGGAAAAT AGCTTCTCAG CGAATCGAGC 1500
AAGCACTACC TGCAGACTTT AAGTTTGGCC GGGGATGGGT TGGAGAATAC GAGCCGCTTC 1560
CTACACCAGT ACTTCTATTT GAAACCTGCA CACCTAAAGA ACCACCTAAA AAAGCATCTG 1620
TGTTTTCAAA GCGGAAATCA AATGCTGCAA CAAAGACGAA TGAGACACTG TTTAAGACTC 1680
CTCTGCCTGC AAAGGAACAA CAGGGTAGCC GACCAGTTCG AGATGGAAAC CATGCATTCC 1740
CATTTCCAGC ATCTATTGGG GCTTTGTCAG AAGGGAGTCC CTCTTTTGTT GCTACTCAGG 1800
TAGGAAACCT AAAATCTATG AGCCAGCATG AATATCGAAA TCCTTCTCAG CTAGATTTTG 1860
TCAAGCCTCA AAATAGGATT CCTCAGCAAG TAGAACTGAA TTTACCCCCA CCAGCAGAAC 1920
AAACCAATTC CGGTTCTGGC TGTGTTTTGG AAAACCAAAG CTTTGGAAAA TCAGATACGG 1980
TGGCATCATA CAGGTCATCA AGTGACATGA TGAGGAACAT GAGTTCTACA GATTCTGAAC 2040
ATTACAAGCA CCAGATGACT ACTAACGGGA TCTTCCCTGG TGGATTGAGG AATGGCAAAG 2100
TCTCTCCCGG TGTGAACAAC AGAATGTTTG ATCTATCTAC TGATTTTGCT AATCAAATGA 2160
GTCGCACAGC AACAAGTTCA CAGCAACCAA TGAGACAACA GAGTCAAAGC CACGAGGAAC 2220
AAGCACAGAT AATGAGAAAC TTCAATGAGA GGGCTAGAAC ACAGCACAAC TCCACTTATA 2280
ATCATCCTAA AGCTGATGCT CCACCGAAGA TTTCGTCACC ACAATCCGCA AGAAGTGAAG 2340
ATTCAGGCAA TGCTTCTGTA GCAGCAGCAC GAGCATGGAT GTCGATAGGA GCTGGAGGGA 2400
ATAATAAACA AACATTTGAA AATGCTAGTA ATCCGAAGAG CAGCCAGATT TCTGCGGAGT 2460
CCTTGTATAA TCCATCAAGA GAACATTTTC ACCAACAAGC TTTCAAACCG AGAGATGCTG 2520
AAGAGACACA GTTCCATCCT CAAAGGAATG GTTTCCCTTT CCAGACATTT GTGCACCAAC 2580
CTGTTCACGG GATGATGAAC GGAGGATACC AACCATTTCA AAACAACCGA CCAATTGTTT 2640
TCCCTCAGAT GGCTGCCCCA ACTTCTGATT TCTCAAGATT CCATGTCCAG TCTCAATGGC 2700
GAGGAGGCAT TACTCCACAA GTCCAGTTGA AGCAGAGACA AGAGAATTTC AATCTCCCAC 2760
CAGATTTGAA CATCGGAGTT CATTCGCCTG ATTCTCCTGC AAAACAATCT TCTGGTGTTC 2820
GTGTCGATTC CCAACAGCCT GATTTGGCGC TACAGCTCTA AAGAAACAGC CATGAAGAAC 2880
AAGCCCAACA ATTTCAAGGA GAAACTTGAC TCCTGTCCCA AGCAAATGTT ATTGCCACAG 2940
CTTTTTCTTT TTTTCTGTGC TCATCACTAC ATCAGGCGAT AACGCGGGCT AGATATGTAA 3000
TCGCTGTGGG AGAAAATGGA AAGAAACACA AGACCAAGTT GTTGAACCAG GCTGGTTTAG 3060
AGTCATCATC AGTCATCAGT ATAGTTGGTC TAAGAGTTGA ATTTGGAGAA TGCTTATTGA 3120
TATCGACACC GTGGTTAGCT AACGATGTTC CTAACGTAGA TGTTCAATCA AACCAATCAA 3180
GTTCTTGATT CACCTGATTC CCTGAAGTCT TTGGTCTTCC TACACTTCTC TATTTGTTCT 3240
ATATATAATA TACGAATTAG TATTATAACA TTTGGTAATC ATATGACCAT AGTAAAAGGT 3300
TGTTTGGCCG AGTC 3315
Sequence Source Ensembl
Keyword

KW-0103--Bromodomain
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0238--DNA-binding
KW-1185--Reference proteome
--
Interpro

IPR001487--Bromodomain
IPR018359--Bromodomain_CS
PROSITE

PS00633--BROMODOMAIN_1
PS50014--BROMODOMAIN_2
Pfam

PF00439--Bromodomain
Gene Ontology

GO:0003677--F:DNA binding
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Arl-0110 fgenesh2_kg.8__ 1402__ AT5G55040.2 Arabidopsis lyrata 89 0.0 1402
WERAM-Thc-0084 EOY12311 Theobroma cacao 50 6e-174 608
WERAM-Viv-0123 VIT_19s0090g00610.t01 Vitis vinifera 49 9e-171 598
WERAM-Prp-0025 EMJ14872 Prunus persica 50 7e-168 588
WERAM-Glm-0233 GLYMA18G10850.1 Glycine max 47 1e-149 528
WERAM-Met-0136 AET00531 Medicago truncatula 46 4e-146 516
WERAM-Sol-0099 Solyc07g064700.2.1 Solanum lycopersicum 44 2e-138 490
WERAM-Sot-0069 PGSC0003DMT400057187 Solanum tuberosum 44 1e-137 488
WERAM-Amt-0042 ERN17379 Amborella trichopoda 48 3e-88 324
WERAM-Mua-0140 GSMUA_Achr9P11570_001 Musa acuminata 48 5e-81 300
WERAM-Pot-0050 POPTR_0004s21620.1 Populus trichocarpa 44 7e-69 259
WERAM-Bro-0125 Bo7g061450.1 Brassica oleracea 44 3e-64 244
WERAM-Org-0099 ORGLA09G0149700.1 Oryza glaberrima 45 1e-63 242
WERAM-Orb-0106 OBART09G18790.1 Oryza barthii 44 5e-63 240
WERAM-Sob-0032 Sb02g032020.1 Sorghum bicolor 39 9e-63 239
WERAM-Tra-0201 Traes_5BL_C2FF92AB7.1 Triticum aestivum 45 1e-62 238
WERAM-Brd-0038 BRADI1G76370.1 Brachypodium distachyon 44 1e-61 236
WERAM-Ors-0095 OS09T0550000-01 Oryza sativa 45 3e-61 234
WERAM-Orbr-0112 OB09G25430.1 Oryza brachyantha 44 6e-61 233
WERAM-Sei-0130 Si034652m Setaria italica 40 8e-61 233
WERAM-Orp-0099 OPUNC09G17160.1 Oryza punctata 44 1e-60 232
WERAM-Orr-0109 ORUFI09G20360.1 Oryza rufipogon 44 3e-60 231
WERAM-Lep-0103 LPERR09G14620.1 Leersia perrieri 42 3e-59 228
WERAM-Ori-0102 BGIOSGA029318-PA Oryza indica 41 4e-59 227
WERAM-Aet-0070 EMT11052 Aegilops tauschii 43 9e-59 226
WERAM-Orgl-0032 OGLUM03G02390.1 Oryza glumaepatula 42 1e-58 225
WERAM-Orni-0029 ONIVA03G02060.1 Oryza nivara 42 2e-58 225
WERAM-Orm-0032 OMERI03G02320.1 Oryza meridionalis 42 2e-58 225
WERAM-Orl-0024 KN538737.1_FGP053 Oryza longistaminata 42 8e-58 223
WERAM-Tru-0062 TRIUR3_25198-P1 Triticum urartu 43 1e-57 222
WERAM-Zem-0121 GRMZM2G353779_P01 Zea mays 40 5e-57 220
WERAM-Hov-0042 MLOC_4085.1 Hordeum vulgare 43 1e-55 215
WERAM-Php-0049 PP1S214_29V6.1 Physcomitrella patens 34 6e-47 186
WERAM-Brr-0082 Bra016456.1-P Brassica rapa 66 3e-42 171
WERAM-Sem-0087 EFJ10182 Selaginella moellendorffii 33 2e-30 132
WERAM-Tar-0011 ENSTRUP00000002345.1 Takifugu rubripes 46 7e-21 100
WERAM-Tut-0157 ENSTTRP00000013157.1 Tursiops truncatus 47 1e-20 99.8
WERAM-Gam-0046 ENSGMOP00000004869.1 Gadus morhua 47 5e-20 97.4
WERAM-Xim-0105 ENSXMAP00000009386.1 Xiphophorus maculatus 44 6e-20 97.4
WERAM-Cym-0003 CMB028CT Cyanidioschyzon merolae 36 7e-20 97.1
WERAM-Ten-0080 ENSTNIP00000009563.1 Tetraodon nigroviridis 45 8e-20 97.1
WERAM-Ova-0211 ENSOARP00000021056.1 Ovis aries 46 9e-20 96.7
WERAM-Pem-0069 ENSPMAP00000007494.1 Petromyzon marinus 44 9e-20 96.7
WERAM-Ere-0020 ENSEEUP00000001322.1 Erinaceus europaeus 45 1e-19 96.7
WERAM-Bot-0219 ENSBTAP00000055298.1 Bos taurus 46 1e-19 96.7
WERAM-Tag-0057 ENSTGUP00000003959.1 Taeniopygia guttata 45 1e-19 96.3
WERAM-Mim-0029 ENSMICP00000002767.1 Microcebus murinus 44 1e-19 96.3
WERAM-Fia-0116 ENSFALP00000010033.1 Ficedula albicollis 45 1e-19 96.3
WERAM-Ocp-0028 ENSOPRP00000002424.1 Ochotona princeps 44 1e-19 96.3
WERAM-Meg-0082 ENSMGAP00000007949.1 Meleagris gallopavo 45 1e-19 96.3
WERAM-Caj-0172 ENSCJAP00000030667.1 Callithrix jacchus 44 1e-19 96.3
WERAM-Anp-0147 ENSAPLP00000015536.1 Anas platyrhynchos 45 1e-19 96.3
WERAM-Gaga-0088 ENSGALP00000013880.4 Gallus gallus 45 2e-19 95.9
WERAM-Eqc-0164 ENSECAP00000017970.1 Equus caballus 44 2e-19 95.9
WERAM-Orn-0045 ENSONIP00000004990.1 Oreochromis niloticus 48 2e-19 95.9
WERAM-Dar-0032 ENSDARP00000018937.7 Danio rerio 41 2e-19 95.9
WERAM-Tas-0083 ENSTSYP00000008412.1 Tarsius syrichta 44 2e-19 95.5
WERAM-Otg-0134 ENSOGAP00000011869.2 Otolemur garnettii 45 2e-19 95.5
WERAM-Poa-0104 ENSPPYP00000013350.2 Pongo abelii 44 2e-19 95.5
WERAM-Loa-0006 ENSLAFP00000000466.3 Loxodonta africana 45 3e-19 95.1
WERAM-Orc-0028 ENSOCUP00000002977.3 Oryctolagus cuniculus 43 3e-19 95.1
WERAM-Nol-0014 ENSNLEP00000001635.1 Nomascus leucogenys 44 3e-19 95.1
WERAM-Gaa-0090 ENSGACP00000011699.1 Gasterosteus aculeatus 46 3e-19 95.1
WERAM-Pat-0121 ENSPTRP00000025033.4 Pan troglodytes 44 3e-19 95.1
WERAM-Myl-0031 ENSMLUP00000002199.2 Myotis lucifugus 46 3e-19 95.1
WERAM-Pof-0211 ENSPFOP00000017156.2 Poecilia formosa 43 3e-19 94.7
WERAM-Pes-0060 ENSPSIP00000008088.1 Pelodiscus sinensis 44 3e-19 94.7
WERAM-Leo-0167 ENSLOCP00000019767.1 Lepisosteus oculatus 43 3e-19 94.7
WERAM-Lac-0027 ENSLACP00000004284.1 Latimeria chalumnae 42 3e-19 94.7
WERAM-Mup-0026 ENSMPUP00000002462.1 Mustela putorius furo 45 3e-19 94.7
WERAM-Hos-0057 ENSP00000384076.1 Homo sapiens 44 4e-19 94.7
WERAM-Vip-0098 ENSVPAP00000009227.1 Vicugna pacos 45 4e-19 94.7
WERAM-Asm-0006 ENSAMXP00000001051.1 Astyanax mexicanus 42 4e-19 94.7
WERAM-Cap-0116 ENSCPOP00000009174.2 Cavia porcellus 45 4e-19 94.7
WERAM-Aim-0032 ENSAMEP00000002305.1 Ailuropoda melanoleuca 45 4e-19 94.7
WERAM-Fec-0133 ENSFCAP00000012198.3 Felis catus 45 4e-19 94.7
WERAM-Ora-0040 ENSOANP00000006321.3 Ornithorhynchus anatinus 47 5e-19 94.4
WERAM-Caf-0005 ENSCAFP00000001030.2 Canis familiaris 45 5e-19 94.4
WERAM-Ict-0068 ENSSTOP00000006036.2 Ictidomys tridecemlineatus 45 5e-19 94.4
WERAM-Dan-0074 ENSDNOP00000007515.3 Dasypus novemcinctus 45 5e-19 94.4
WERAM-Chs-0121 ENSCSAP00000006430.1 Chlorocebus sabaeus 45 5e-19 94.4
WERAM-Gog-0148 ENSGGOP00000013085.2 Gorilla gorilla 45 5e-19 94.4
WERAM-Paa-0008 ENSPANP00000012515.1 Papio anubis 45 5e-19 94.4
WERAM-Usm-0037 UM06029P0 Ustilago maydis 42 5e-19 94.4
WERAM-Orla-0122 ENSORLP00000014580.1 Oryzias latipes 41 6e-19 94.0
WERAM-Dio-0041 ENSDORP00000004516.1 Dipodomys ordii 45 6e-19 94.0
WERAM-Mum-0217 ENSMUSP00000004985.9 Mus musculus 45 6e-19 94.0
WERAM-Ran-0166 ENSRNOP00000041680.3 Rattus norvegicus 45 7e-19 93.6
WERAM-Mod-0139 ENSMODP00000019681.4 Monodelphis domestica 43 8e-19 93.6
WERAM-Anc-0094 ENSACAP00000009005.3 Anolis carolinensis 43 9e-19 93.6
WERAM-Mae-0032 ENSMEUP00000002473.1 Macropus eugenii 43 9e-19 93.6
WERAM-Sah-0184 ENSSHAP00000019759.1 Sarcophilus harrisii 43 1e-18 93.2
WERAM-Soa-0004 ENSSARP00000000368.1 Sorex araneus 42 2e-18 92.4
WERAM-Spr-0041 CBQ70925 Sporisorium reilianum 36 2e-18 92.4
WERAM-Ptv-0134 ENSPVAP00000011359.1 Pteropus vampyrus 43 2e-18 92.4
WERAM-Mam-0134 ENSMMUP00000019345.2 Macaca mulatta 43 2e-18 92.4
WERAM-Xet-0097 ENSXETP00000031780.3 Xenopus tropicalis 43 3e-18 91.7
WERAM-Ect-0073 ENSETEP00000007999.1 Echinops telfairi 43 3e-18 91.7
Created Date 25-Jun-2016