WERAM Information

Tag Content
WERAM ID WERAM-Art-0093
Ensembl Protein ID AT3G60110.1
Uniprot Accession Q93ZQ2; Q93ZQ2_ARATH
Genbank Protein ID NP_567092.4
Protein Name AT3g60110/T2O9_90
Genbank Nucleotide ID NM_115874.5
Gene Name At3g60110;BRD6
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT3G60110 AT3G60110.1 AT3G60110.1
Details
Type Family Domain Substrates AA References (PMIDs)
Ac_Reader Bromodomain Bromodomain K 12466527
Status Reviewed
Classification
Type Family E-value Score Start End
Ac_Reader Bromodomain 3.10e-13 50.4 312 380
Organism Arabidopsis thaliana
NCBI Taxa ID 3702
Functional Description
(View)
Domain Profile
  Ac_Reader Bromodomain
    BROMO.txt   2 ehevsepFrepvdpqleipdYydiikePmdLstikerleegnYss.peefvkDvrlifnNakaynenkss 70 
                  +h+  ++F+ + +  ++ +dY+ +i++++d++ti++++e+g Y s  + f++D++l+f+Na  + + +ss
  AT3G60110.1 312 SHPRGSVFESRLRS-QDTKDYKRLIRQHLDMKTIEKKMEKGSYVSsSLSFYRDLKLLFTNAIVFFPTSSS 380
                  688999********.8***************************9989***************99888775 PP
Protein Sequence
(Fasta)		MKEDEEEEAV ISNGMNDDDD TNNINNSSTE FDNNRIGDGD DNSNLNQIKQ VWGTWEELVL 60
TCAVKRHAFS DWDSVAKEVQ ARSRSSLIVS AVNCRLKYQD LKRRFQDSVD VGDENTEAAA 120
NEEDEVGEIS WLEQLRSLHM AELRREVQRC DDSILSLQLK VKKLEEEKDG DDGDNKPDLK 180
NDETKPVRVN RETTESDRDD NRSMNESNST ASVDKIADHD RLDGDKMVKA NENSRNPDPD 240
PVNKAETPEE EERTVSKRSE MSNSGELDES GTSNCLGKRK GQKYRSGGGG GGVKSAGDKS 300
QPLIDIIKLI RSHPRGSVFE SRLRSQDTKD YKRLIRQHLD MKTIEKKMEK GSYVSSSLSF 360
YRDLKLLFTN AIVFFPTSSS ESIAAQELRT LVSNEMKKRT GKLGHCVIKS EAESSVSRQK 420
SSVLSLVPCK KKSSALKKTS PSSSSRQKDE KKSQEVSEEK IVTTTATTSA RSSRRTSKEI 480
AVVAKDTKTG RAKNNIKKQT DTKTESSDDD DDEKEENSKT EKKTVADKKK SVADFLKRIK 540
KNSPQKGKET TSKNQKKNDG NVKKENDHQK KSDGNVKKEN SKVKPRELRS STGKKKVEVE 600
NNNSKSSSKR KQTKETAEVA TGKRGRESGK DDKQPRKRSR R 641
Nucleotide Sequence
(Fasta)		ATATATAGCT AACGAGACCC TAAATATTTT TTTCTTTCTT ATAACATATA GTTTCATTTC 60
ATATATTTAA AGGCTTCATA ATACGAAACA AGGTGATAAG AAAAAAAAAA AGAAAAAAAA 120
AAAGCAAATT AAAAATTAAA TCCCTAAAAA CAAACGAGCG TATTGTTATG AAGGAGGACG 180
AAGAAGAAGA AGCAGTGATA TCGAACGGCA TGAACGACGA CGACGATACT AACAATATTA 240
ACAACAGTTC CACTGAATTT GATAACAATC GTATCGGAGA CGGAGACGAT AACAGTAATC 300
TGAATCAGAT CAAACAAGTA TGGGGAACGT GGGAGGAGTT GGTGTTAACA TGCGCCGTTA 360
AACGTCATGC TTTTTCCGAT TGGGACTCCG TCGCTAAGGA GGTTCAGGCT CGTTCCCGGA 420
GTTCTCTCAT CGTTTCCGCC GTCAATTGCA GGCTTAAGTA TCAAGATCTC AAACGTAGGT 480
TCCAAGATTC CGTCGACGTC GGAGACGAAA ATACCGAAGC GGCGGCGAAC GAGGAGGATG 540
AAGTCGGTGA AATCTCTTGG CTCGAGCAGT TACGGAGTCT TCATATGGCG GAGCTCCGCC 600
GTGAGGTTCA ACGATGTGAC GACTCGATAC TGTCGCTTCA GTTAAAAGTT AAGAAACTAG 660
AGGAGGAGAA AGACGGAGAT GATGGGGACA ATAAACCAGA TCTGAAAAAC GACGAAACTA 720
AACCGGTGAG AGTTAACCGG GAAACGACGG AGTCTGACCG GGATGATAAT AGGTCGATGA 780
ACGAGTCCAA CTCAACTGCC TCCGTCGATA AAATCGCCGA TCACGACCGA TTAGACGGAG 840
ATAAAATGGT TAAGGCTAAC GAGAATTCGA GAAATCCAGA TCCCGATCCG GTTAATAAGG 900
CGGAGACGCC GGAGGAGGAA GAAAGAACGG TTAGTAAAAG ATCGGAAATG AGTAACTCAG 960
GCGAGTTGGA TGAATCGGGA ACGTCCAATT GTCTTGGAAA GAGGAAAGGA CAGAAATACA 1020
GAAGCGGCGG AGGCGGCGGT GGTGTCAAAT CGGCCGGCGA TAAATCACAG CCGTTGATAG 1080
ATATCATTAA GCTTATTCGG TCTCATCCCC GTGGTTCCGT GTTCGAATCC CGGCTTAGGA 1140
GCCAGGACAC TAAGGATTAC AAGAGGTTGA TAAGGCAGCA TTTGGACATG AAGACAATAG 1200
AGAAGAAGAT GGAGAAAGGA TCTTATGTTT CTTCAAGCCT CTCTTTTTAC AGAGACCTCA 1260
AGCTTCTCTT CACAAACGCC ATTGTCTTCT TTCCTACATC TTCCTCTGAA TCCATAGCTG 1320
CTCAAGAGCT AAGAACACTC GTCTCAAACG AGATGAAGAA ACGAACGGGA AAATTGGGTC 1380
ACTGTGTCAT CAAATCAGAG GCTGAATCTT CGGTTTCTAG ACAGAAATCC TCTGTTCTTT 1440
CTCTTGTTCC CTGTAAAAAG AAGAGCTCTG CTTTGAAAAA GACGTCTCCT TCTTCAAGCT 1500
CTAGACAAAA AGATGAGAAG AAATCTCAGG AAGTTTCGGA GGAGAAGATT GTGACTACTA 1560
CTGCTACTAC TAGTGCAAGA AGCTCGAGGA GAACGAGCAA AGAGATTGCT GTTGTTGCTA 1620
AAGATACTAA AACGGGAAGA GCCAAGAATA ATATTAAGAA ACAAACGGAT ACGAAAACAG 1680
AATCATCTGA CGATGATGAT GATGAGAAGG AAGAGAATTC TAAAACAGAG AAGAAGACAG 1740
TAGCGGATAA GAAGAAGAGC GTGGCTGATT TCTTGAAGAG GATAAAGAAG AACTCTCCAC 1800
AGAAAGGAAA AGAAACAACG AGTAAAAATC AGAAGAAGAA TGATGGAAAC GTTAAGAAAG 1860
AGAACGATCA TCAGAAGAAG AGTGATGGAA ACGTTAAGAA AGAGAACAGT AAAGTGAAAC 1920
CGAGGGAATT GAGGAGTAGT ACGGGTAAAA AGAAGGTTGA GGTAGAGAAT AATAATAGTA 1980
AGAGCTCATC GAAACGAAAA CAAACGAAAG AAACAGCAGA GGTGGCTACT GGAAAACGAG 2040
GTAGGGAATC GGGAAAAGAC GATAAACAGC CAAGGAAAAG AAGCAGAAGA TGAAACTGAA 2100
CTAGCCTGTG GTTAAGCATT TGTACATTTG ATGTGCCAGA AGTATTCATC ATTCCTCTTA 2160
ACATCACTGT TTCGGAGGGA ATCATAGGTC TTGTTAGGTA TTTATTCTCA TAGTTACCAG 2220
TTTAGTTTTT TTTTTTGTTT AAACTGTGTT TTCCTTGTTA GAGGGTATAA CTATAGTGGT 2280
TATAAACTGT GTCTTCATTT ATTTGTCTAG TTTGATCGAT TCATGTTCAC AAAACCTGAA 2340
ACCCGGTTTT TACTTTGGCA ATAAAATCAA ATCTCAAAGA ACATC 2386
Sequence Source Ensembl
Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0238--DNA-binding
KW-1185--Reference proteome
--
Interpro

IPR001487--Bromodomain
IPR009057--Homeodomain-like
IPR001005--SANT/Myb
PROSITE

PS50014--BROMODOMAIN_2
Pfam

PF00439--Bromodomain
PF00249--Myb_DNA-binding
Gene Ontology

GO:0003677--F:DNA binding
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Arl-0135 scaffold_503237.1 Arabidopsis lyrata 85 0.0 752
WERAM-Bro-0157 Bo8g094870.1 Brassica oleracea 62 2e-133 474
WERAM-Brr-0039 Bra007506.1-P Brassica rapa 64 5e-129 459
WERAM-Mua-0126 GSMUA_Achr8P25530_001 Musa acuminata 34 6e-44 176
WERAM-Pot-0008 POPTR_0001s23640.1 Populus trichocarpa 38 8e-43 172
WERAM-Thc-0108 EOY32463 Theobroma cacao 34 1e-38 158
WERAM-Prp-0043 EMJ22101 Prunus persica 35 5e-37 153
WERAM-Viv-0085 VIT_13s0156g00340.t01 Vitis vinifera 54 2e-29 128
WERAM-Glm-0202 GLYMA15G42440.2 Glycine max 50 3e-27 120
WERAM-Met-0045 AES66032 Medicago truncatula 50 7e-27 119
WERAM-Brd-0083 BRADI3G40060.1 Brachypodium distachyon 32 2e-26 117
WERAM-Sol-0008 Solyc01g073950.2.1 Solanum lycopersicum 53 2e-25 115
WERAM-Sot-0018 PGSC0003DMT400016153 Solanum tuberosum 54 3e-22 104
WERAM-Sei-0046 Si013408m Setaria italica 44 4e-20 97.1
WERAM-Orp-0090 OPUNC08G18190.1 Oryza punctata 45 4e-20 97.1
WERAM-Orni-0095 ONIVA08G22660.1 Oryza nivara 44 6e-20 96.7
WERAM-Ors-0085 OS08T0510700-01 Oryza sativa 44 7e-20 96.7
WERAM-Orr-0099 ORUFI08G22500.1 Oryza rufipogon 44 7e-20 96.7
WERAM-Ori-0091 BGIOSGA026697-PA Oryza indica 44 7e-20 96.7
WERAM-Orgl-0092 OGLUM08G21320.1 Oryza glumaepatula 44 8e-20 96.3
WERAM-Hov-0108 MLOC_75616.3 Hordeum vulgare 37 1e-19 95.5
WERAM-Org-0093 ORGLA08G0177200.1 Oryza glaberrima 45 3e-19 94.7
WERAM-Sem-0102 EFJ33930 Selaginella moellendorffii 42 4e-19 94.0
WERAM-Amt-0030 ERN11592 Amborella trichopoda 59 4e-19 94.0
WERAM-Lep-0092 LPERR08G16990.1 Leersia perrieri 44 1e-18 92.0
WERAM-Tru-0078 TRIUR3_28812-P1 Triticum urartu 44 4e-18 90.9
WERAM-Sob-0110 Sb07g027680.1 Sorghum bicolor 44 2e-17 88.6
WERAM-Orb-0096 OBART08G20090.1 Oryza barthii 43 1e-15 82.4
WERAM-Aet-0108 EMT21081 Aegilops tauschii 42 1e-15 82.4
WERAM-Zem-0018 GRMZM2G022499_P01 Zea mays 35 3e-14 78.2
WERAM-Php-0024 PP1S148_42V6.1 Physcomitrella patens 37 8e-13 73.2
WERAM-Tra-0071 Traes_2BS_832F28506.1 Triticum aestivum 37 1e-12 72.8
WERAM-Spr-0015 CBQ70270 Sporisorium reilianum 33 6e-09 60.5
WERAM-Orl-0103 KN541195.1_FGP005 Oryza longistaminata 39 1e-07 56.2
WERAM-Lab-0034 EDR12435 Laccaria bicolor 32 4e-07 54.3
WERAM-Crn-0037 AAW45314 Cryptococcus neoformans 33 5e-07 53.9
WERAM-Pug-0014 EFP81335 Puccinia graminis 37 1e-06 52.4
WERAM-Caa-0036 KGT63469 Candida albicans 27 4e-06 51.2
Created Date 25-Jun-2016