WERAM Information

Tag Content
WERAM ID WERAM-Art-0011
Ensembl Protein ID AT1G15215.2
Uniprot Accession Q9XI47; SHH1_ARATH; A8MRU8; Q2V4N1; Q8GYR2
Genbank Protein ID NP_001031048.1; NP_849665.1; NP_849666.2
Protein Name Protein SAWADEE HOMEODOMAIN HOMOLOG 1
Genbank Nucleotide ID NM_001035971.2; NM_179334.2; NM_179335.2
Gene Name SHH1;DTF1;At1g15215;F9L1.16
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT1G15215 AT1G15215.2 AT1G15215.2
Details
Type Family Domain Substrates AA References (PMIDs)
Me_Reader Me_Reader_other SAWADEEhomeodomain H3K9me3 K 24035451
Status Reviewed
Classification
Type Family E-value Score Start End
Me_Reader Me_Reader_other 1.00e-145 511
Organism Arabidopsis thaliana
NCBI Taxa ID 3702
Functional Description
(View)		 Involved in RNA-directed DNA methylation (RdDM). Required for the silencing of some endogenous RdDM targets and accumulation of 24-nt siRNAs, but not for the production of Pol V-dependent transcripts. Functions in transcriptional silencing through both DNA methylation-dependent and -independent pathways. Required for both maintenance and de-novo DNA methylation. Plays a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Domain Profile
  Me_Reader Me_Reader_other
Query: 1   MAASDDSSHYFTEFTLSEIVDMENLYKELGDQSLHKDFCQTVASTFSCSVNRNGKSSITW 60
           MAASDDSSHYFTEFTLSEIVDMENLYKELGDQSLHKDFCQTVASTFSCSVNRNGKSSITW
Sbjct: 1   MAASDDSSHYFTEFTLSEIVDMENLYKELGDQSLHKDFCQTVASTFSCSVNRNGKSSITW 60
Query: 61  KQVQIWFQEKLKHQSQPKSKTLPSPPLQIHDLXXXXXXXXXXXXXTFVGNSTFVQTRKGK 120
           KQVQIWFQEKLKHQSQPKSKTLPSPPLQIHDL             TFVGNSTFVQTRKGK
Sbjct: 61  KQVQIWFQEKLKHQSQPKSKTLPSPPLQIHDLSNPSSYASNASNATFVGNSTFVQTRKGK 120
Query: 121 ASDLADLAFEAKSARDYAWYDVSSFLTYRVLRTGELEVRVRFSGFDNRHDEWVNVKTSVR 180
           ASDLADLAFEAKSARDYAWYDVSSFLTYRVLRTGELEVRVRFSGFDNRHDEWVNVKTSVR
Sbjct: 121 ASDLADLAFEAKSARDYAWYDVSSFLTYRVLRTGELEVRVRFSGFDNRHDEWVNVKTSVR 180
Query: 181 ERSIPVEPSECGRVNVGDLLLCFQEREDQALYCDGHVLNIKRGIHDHARCNCVFLVRYEL 240
           ERSIPVEPSECGRVNVGDLLLCFQEREDQALYCDGHVLNIKRGIHDHARCNCVFLVRYEL
Sbjct: 181 ERSIPVEPSECGRVNVGDLLLCFQEREDQALYCDGHVLNIKRGIHDHARCNCVFLVRYEL 240
Query: 241 DNTEESLGLERICRRPEE 258
           DNTEESLGLERICRRPEE
Sbjct: 241 DNTEESLGLERICRRPEE 258
Protein Sequence
(Fasta)		MAASDDSSHY FTEFTLSEIV DMENLYKELG DQSLHKDFCQ TVASTFSCSV NRNGKSSITW 60
KQVQIWFQEK LKHQSQPKSK TLPSPPLQIH DLSNPSSYAS NASNATFVGN STFVQTRKGK 120
ASDLADLAFE AKSARDYAWY DVSSFLTYRV LRTGELEVRV RFSGFDNRHD EWVNVKTSVR 180
ERSIPVEPSE CGRVNVGDLL LCFQEREDQA LYCDGHVLNI KRGIHDHARC NCVFLVRYEL 240
DNTEESLGLE RICRRPEE 258
Nucleotide Sequence
(Fasta)		CTTCTTCTTC TTCTTCCTTG TGCGCTCGAT AATGGCTGCT TCCGATGATT CCTCTCACTA 60
TTTCACCGAG TTTACCTTGT CTGAGATTGT AGACATGGAG AATCTGTATA AGGAGCTCGG 120
TGACCAATCT CTCCACAAAG ATTTCTGTCA AACTGTTGCC TCTACTTTTA GTTGTTCTGT 180
GAATCGGAAT GGCAAATCCT CTATAACCTG GAAACAGGTA CAGATTTGGT TCCAGGAGAA 240
GCTGAAGCAT CAAAGCCAAC CAAAATCCAA AACTTTGCCA TCTCCCCCTT TGCAGATTCA 300
TGACTTATCT AATCCCAGTT CTTATGCTTC AAATGCCTCA AATGCTACCT TTGTTGGGAA 360
TTCTACCTTT GTTCAAACAC GAAAAGGCAA GGCCTCTGAT TTAGCTGATC TGGCTTTTGA 420
GGCTAAATCA GCGCGGGACT ACGCGTGGTA TGACGTGTCT TCGTTCCTTA CTTATAGAGT 480
TCTTCGCACT GGTGAACTGG AAGTGCGTGT ACGGTTTTCT GGGTTCGACA ACCGACACGA 540
TGAGTGGGTA AACGTCAAAA CATCAGTGCG TGAGCGGTCT ATTCCTGTAG AACCATCAGA 600
GTGTGGGAGA GTGAACGTTG GAGACCTGCT TCTATGTTTC CAAGAAAGAG AGGATCAAGC 660
ACTCTACTGT GATGGTCATG TTTTGAATAT CAAGAGAGGG ATTCATGATC ACGCGAGATG 720
TAACTGCGTG TTTCTTGTTC GCTACGAGCT TGACAATACA GAGGAATCGC TGGGACTAGA 780
AAGAATTTGC CGCCGCCCTG AAGAGTAATT TTTTTTGGTT TTGAAGTCAT ATTTGGAAGA 840
TGCAGTAAAC TATGACTATA TAGTATATGA CTGACCCAAA AATGGAATAA CATGCTCATG 900
TATAGACTTC CACTACTAAG TACCTACCGG CCCTAGGATT CTATGTTAGT TTTTTTCTGT 960
CAACTATGTG GAATAAAGTG CAAAAGCTTA GAATTGTAAA GGGAATGGTG ATGGTACAAT 1020
GTAATAATAC CCAAATGCTT AACCAGTTAA CACCCTATGT AATGTTCAAC ATACAGTCTC 1080
ATTCTTGTG
Sequence Source Ensembl
Keyword

KW-0002--3D-structure
KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
--
Interpro

IPR032001--SAWADEE_dom
PROSITE
Pfam

PF16719--SAWADEE
Gene Ontology

GO:0005634--C:nucleus
GO:0003682--F:chromatin binding
GO:0046872--F:metal ion binding
GO:0006306--P:DNA methylation
GO:0031047--P:gene silencing by RNA
GO:0006346--P:methylation-dependent chromatin silencing
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Arl-0017 fgenesh1_pg.C_scaffold_1001378 Arabidopsis lyrata 80 1e-125 446
WERAM-Bro-0092 Bo5g020650.1 Brassica oleracea 75 9e-110 393
WERAM-Brr-0130 Bra026155.1-P Brassica rapa 75 2e-108 389
WERAM-Thc-0076 EOY26911 Theobroma cacao 54 3e-73 272
WERAM-Pot-0006 POPTR_0001s19000.1 Populus trichocarpa 52 1e-67 253
WERAM-Viv-0062 VIT_09s0002g03660.t01 Vitis vinifera 48 2e-66 249
WERAM-Glm-0091 GLYMA08G21560.5 Glycine max 45 6e-60 228
WERAM-Sot-0007 PGSC0003DMT400006487 Solanum tuberosum 43 3e-55 212
WERAM-Met-0171 KEH18213 Medicago truncatula 44 2e-54 209
WERAM-Sol-0058 Solyc03g120940.2.1 Solanum lycopersicum 43 4e-54 208
WERAM-Prp-0090 EMJ17222 Prunus persica 63 6e-49 191
WERAM-Orbr-0105 OB09G14330.1 Oryza brachyantha 39 3e-48 189
WERAM-Org-0096 ORGLA09G0048600.1 Oryza glaberrima 39 5e-48 188
WERAM-Orni-0098 ONIVA09G05900.1 Oryza nivara 39 6e-48 187
WERAM-Ori-0106 BGIOSGA029938-PA Oryza indica 39 6e-48 187
WERAM-Orr-0103 ORUFI09G07320.1 Oryza rufipogon 39 8e-48 187
WERAM-Orgl-0096 OGLUM09G07230.2 Oryza glumaepatula 39 2e-47 186
WERAM-Orm-0090 OMERI09G05210.2 Oryza meridionalis 38 3e-46 182
WERAM-Orb-0100 OBART09G06730.1 Oryza barthii 38 3e-42 169
Created Date 25-Jun-2016