Tag |
Content |
WERAM ID |
WERAM-Asg-0032 |
Ensembl Protein ID |
AAS54753 |
Gene Name |
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Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
HD2 |
3.1 |
29 |
|
|
|
Organism |
Ashbya gossypii |
Domain Profile |
HDAC HD2
Query: 50 TKITDEE-----LHQAKYQFSTKEAMEILLT----QGKDVEFTFEQDNVLQLGL------ 94 TK+T EE + QA + K ++L+ K V T QD Q+ Sbjct: 14 TKVTPEEDSLVHISQASLDCTVKSGESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDK 73 Query: 95 ---LLHSGTRATLELPYNKVQNVERYDVMSS 122 L HSGT+A + K N+E+ D SS Sbjct: 74 EFELSHSGTKANVHFIGYKSPNIEQDDFTSS 104 Database: Arabidopsis_thaliana.TAIR10.31.pep.all.fa Posted date: Jun 9, 2016 10:44 AM Number of letters in database: 14,482,851 Number of sequences in database: 35,386 Lambda K H 0.316 0.131 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 35386 Number of Hits to DB: 7,565,246 Number of extensions: 310575 Number of successful extensions: 850 Number of sequences better than 10.0: 4 Number of HSP's gapped: 850 Number of HSP's successfully gapped: 4 Length of query: 270 Length of database: 14,482,851 Length adjustment: 99 Effective length of query: 171 Effective length of database: 10,979,637 Effective search space: 1877517927 Effective search space used: 1877517927 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 60 (27.7 bits)
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Protein Sequence (Fasta) | MSRKMDSERL ETHIKWRLFD IKNELYFVGL HCDDGLVLYI YSPFQDLVQT KITDEELHQA 60 KYQFSTKEAM EILLTQGKDV EFTFEQDNVL QLGLLLHSGT RATLELPYNK VQNVERYDVM 120 SSLSFWQMRS ILALTSMNEE LQNMLVEKDS AIEFLGYTAK EYGGSRLIRR WAPIGSQNYE 180 SLTKFKPGVW KKSWVEKYRW KSKSRRAALL ANDLEVLDQV EPSDYRPKTP TPEDTEAEDA 240 QGEFREDSQV TDSFLATLSE AEFSDRINSQ Protein Fasta Sequence
>AAS54753|HD2|Ashbya gossypii MSRKMDSERLETHIKWRLFDIKNELYFVGLHCDDGLVLYIYSPFQDLVQTKITDEELHQAKYQFSTKEAMEILLTQGKDVEFTFEQDNVLQLGLLLHSGTRATLELPYNKVQNVERYDVMSSLSFWQMRSILALTSMNEELQNMLVEKDSAIEFLGYTAKEYGGSRLIRRWAPIGSQNYESLTKFKPGVWKKSWVEKYRWKSKSRRAALLANDLEVLDQVEPSDYRPKTPTPEDTEAEDAQGEFREDSQVTDSFLATLSEAEFSDRINSQ
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Nucleotide Sequence (Fasta) | ATGTCCAGAA AAATGGATTC TGAGCGACTG GAGACTCATA TCAAATGGAG GCTATTTGAT 60 ATTAAGAATG AACTATATTT TGTCGGCTTG CATTGTGATG ACGGCTTAGT GCTTTACATA 120 TATTCTCCGT TTCAGGATTT AGTACAGACA AAAATCACTG ATGAAGAGTT ACATCAAGCC 180 AAGTATCAGT TCAGCACCAA GGAAGCTATG GAAATCCTAC TGACCCAAGG AAAAGATGTG 240 GAGTTTACCT TTGAGCAGGA CAACGTGCTC CAGTTGGGGT TGCTATTGCA CAGTGGAACC 300 AGGGCTACAC TCGAACTACC CTATAATAAA GTACAAAATG TTGAACGGTA TGATGTCATG 360 AGTTCGCTGT CATTTTGGCA GATGCGAAGC ATTTTGGCAC TGACATCTAT GAACGAAGAA 420 CTACAAAATA TGTTAGTTGA AAAGGATTCA GCGATAGAGT TCCTGGGTTA TACTGCGAAG 480 GAATATGGCG GCAGCAGGCT CATAAGACGT TGGGCTCCCA TAGGCTCACA GAACTACGAA 540 TCCCTAACAA AGTTTAAACC TGGTGTTTGG AAGAAAAGTT GGGTAGAGAA GTATAGGTGG 600 AAATCTAAGT CAAGAAGGGC GGCGCTTTTA GCCAATGACT TGGAGGTGCT CGACCAGGTA 660 GAGCCGAGCG ATTACAGACC TAAAACACCT ACCCCAGAAG ATACAGAGGC CGAGGATGCG 720 CAAGGGGAAT TTCGAGAAGA TAGCCAGGTA ACTGATAGCT TCTTGGCTAC ACTTTCAGAA 780 GCTGAGTTTA GCGACAGGAT AAACTCTCAA TAA
814Nucleotide Fasta Sequence
>AAS54753|HD2|Ashbya gossypii ATGTCCAGAAAAATGGATTCTGAGCGACTGGAGACTCATATCAAATGGAGGCTATTTGATATTAAGAATGAACTATATTTTGTCGGCTTGCATTGTGATGACGGCTTAGTGCTTTACATATATTCTCCGTTTCAGGATTTAGTACAGACAAAAATCACTGATGAAGAGTTACATCAAGCCAAGTATCAGTTCAGCACCAAGGAAGCTATGGAAATCCTACTGACCCAAGGAAAAGATGTGGAGTTTACCTTTGAGCAGGACAACGTGCTCCAGTTGGGGTTGCTATTGCACAGTGGAACCAGGGCTACACTCGAACTACCCTATAATAAAGTACAAAATGTTGAACGGTATGATGTCATGAGTTCGCTGTCATTTTGGCAGATGCGAAGCATTTTGGCACTGACATCTATGAACGAAGAACTACAAAATATGTTAGTTGAAAAGGATTCAGCGATAGAGTTCCTGGGTTATACTGCGAAGGAATATGGCGGCAGCAGGCTCATAAGACGTTGGGCTCCCATAGGCTCACAGAACTACGAATCCCTAACAAAGTTTAAACCTGGTGTTTGGAAGAAAAGTTGGGTAGAGAAGTATAGGTGGAAATCTAAGTCAAGAAGGGCGGCGCTTTTAGCCAATGACTTGGAGGTGCTCGACCAGGTAGAGCCGAGCGATTACAGACCTAAAACACCTACCCCAGAAGATACAGAGGCCGAGGATGCGCAAGGGGAATTTCGAGAAGATAGCCAGGTAACTGATAGCTTCTTGGCTACACTTTCAGAAGCTGAGTTTAGCGACAGGATAAACTCTCAATAA
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Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |